Detailed information of component protein


Summary

Component ID T6CP015588
Component protein type TssF
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (594 a.a.); Nucleotide sequence (1782 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20925
Coordinate (Strand) 1430116..1431897 (-)
NCBI ID WP_121691714.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF59772
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.3e-201 1..590
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-593 MADGFLEKYNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELSDSLLETLYPHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTTQEVEIVPLQIAAATLAGQPIDAPFSASFAGTASCLRLSLRSTAPRGGTFPEMGLTKLQVFLSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAMLPYPANSFDGYRLLTEFFALPQKFLFLDIDGLHRWSGGDCELYIYLDAADAQLERMVSVKDFVLNASPVINLFKQSCEPLSLDGTRTEYRLLPDARRQRTREIYAVENVQLTSRSGQSEKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEKRGPLGPLDVVASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLISHLLLNHLSLTDSGGAPLKDILSLYSFRDSPETRQLVEAISKVEAQNSHARIGATMVPGTDITVEFDPALIARPAAFVFAGVLNHFFGLYTSINSFTRLTATMRGHSKPIARWPARAADRPLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9844 - -


  Protein sequence: 594 a.a.    

>T6CP015588 NZ_CP033035:c1431897-1430116 [Agrobacterium fabrum] [TssF]
MADGFLEKYNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELSDSLLETLY
PHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTTQEVEIVPLQIAAATLAGQPIDAPFSASFAGTA
SCLRLSLRSTAPRGGTFPEMGLTKLQVFLSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAM
LPYPANSFDGYRLLTEFFALPQKFLFLDIDGLHRWSGGDCELYIYLDAADAQLERMVSVKDFVLNASPVINLFKQSCEPL
SLDGTRTEYRLLPDARRQRTREIYAVENVQLTSRSGQSEKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEK
RGPLGPLDVVASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLISHLLLNHLSL
TDSGGAPLKDILSLYSFRDSPETRQLVEAISKVEAQNSHARIGATMVPGTDITVEFDPALIARPAAFVFAGVLNHFFGLY
TSINSFTRLTATMRGHSKPIARWPARAADRPLL*

  Nucleotide sequence: 1782 bp    

>T6CP015588 NZ_CP033035:c1431897-1430116 [Agrobacterium fabrum] [TssF]
ATGGCTGACGGCTTCCTCGAAAAATACAATGACGAGCTTTTTGCGCTGCGAAAACGCGCGTCGCGCTTTGCGGCGGCGTT
TCCGAAGATCGCTGGCAGGCTGCGCATGACCGGCGATGTCGCCGACGATCCGCATGTCGAGCGGCTGATCCAGAGTTTTG
CCTATTCCGCCGCCCGCGTGCGCCAAAAGCTGGACGACGAATTTCCCGAATTGTCAGACAGCCTGCTGGAAACGCTCTAT
CCGCATTATCTTGCACCGATCCCTTCGATGAGCGTCGTGCAATTCGCTCCGAGCCCGGCGTTGGCAACCGTACAGACGCT
TGCCCGTCACAGCGAAATCCTCGCCGAACCGGTGGGCGGCGAAAGCTGCCGTTTTCGCACCACGCAGGAGGTGGAAATCG
TTCCGCTGCAGATCGCAGCAGCCACGCTTGCCGGCCAGCCGATCGATGCGCCTTTTTCGGCATCCTTTGCCGGCACTGCC
AGTTGCCTGCGGCTTTCGCTGCGCAGCACGGCGCCGCGCGGCGGCACATTCCCGGAAATGGGACTGACGAAACTCCAGGT
CTTCCTGTCCGCTGCATGGCAGCAGGCAACGGCGCTTTACGAGCTTTTGACCAACCATTGCGTCGGCATGGCGCTTGCCC
GTCATTCCGAGGACAAGGAAGCCATCTTCCTGCCGGCCGGCAATCTCAGACCTTCCGGGTTCACCCGCGATCAGGCCATG
CTGCCCTATCCGGCCAACAGCTTTGACGGATACAGGCTTCTCACCGAATTCTTCGCGCTGCCGCAGAAGTTTCTCTTTCT
CGATATTGACGGGCTGCACAGATGGAGCGGCGGTGATTGCGAGCTTTATATCTACCTGGATGCCGCCGATGCGCAGCTTG
AGCGCATGGTGTCGGTCAAGGATTTCGTGCTGAACGCCTCCCCGGTCATCAACCTGTTCAAGCAAAGCTGCGAACCGCTC
AGCCTGGATGGAACCCGGACCGAATACCGCCTGCTACCGGATGCTCGCCGCCAGCGGACCCGTGAGATATATGCGGTCGA
AAACGTCCAGCTGACCAGCCGTTCCGGGCAGAGCGAGAAAACCTCTCCCTTCTTCGGCCGCACCCAACGCAACAATGGCG
CGAATGTATTCTGGCAGATCCAGCGCCGGTTCGACGATGATGGCTCCTCCGATACCGACATCGCCTTCGTGGATGAAAAG
CGCGGACCGCTGGGGCCGCTCGACGTGGTAGCGAGCATCGACACGCTCTGCATCAACCGTGAGCTACCGAGCCAGCTTCC
GTTTGGCGGCGGGCACCCCTTCCTGCAACTTTCGACCGGCAATGAAGCGGTGAAATCGGTCCATGCGCTAATGCCGCCGA
CGGCAGCGATCCGCGTCAACGAACGCTCGGCGCGCGAGTGGCGGCTGATATCGCATCTTCTCCTCAACCATCTTTCCCTC
ACCGATAGCGGCGGCGCTCCGCTGAAAGATATTCTGTCGCTTTATTCCTTCAGAGACAGCCCGGAAACCCGGCAGCTCGT
GGAGGCGATCAGCAAGGTCGAAGCACAGAATTCCCACGCCCGCATCGGCGCGACGATGGTGCCCGGCACCGACATAACGG
TGGAGTTCGATCCCGCGCTGATCGCACGGCCTGCGGCCTTTGTATTCGCCGGCGTCCTCAACCATTTCTTCGGGCTTTAC
ACCTCGATCAACAGCTTCACGCGGCTGACGGCGACGATGCGTGGCCATTCCAAACCAATTGCCCGCTGGCCGGCCCGCGC
CGCTGACCGGCCGTTGCTTTAG