Detailed information of component protein
Summary
Component ID | T6CP015587 |
Component protein type | TssG |
T6SS ID (Type) | T6SS01243 ![]() |
Strain | Agrobacterium fabrum strain 12D13 |
Replicon | chromosome |
Sequence | Protein sequence (335 a.a.); Nucleotide sequence (1005 bp) |
Reference |

External database links
Locus tag (Gene) | At12D13_RS20920 |
Coordinate (Strand) | 1429102..1430106 (-) |
NCBI ID | WP_121691713.1 |
RefSeq | NZ_CP033035 |
Uniprot ID | UPI000EF59B2F |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 6e-61 | 59..309 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-334 | MDQQIPTMKDRQAALLSDDPGRFEPTTAFRVAQFVAADDGVVIGAHGGTQPTPLAVSGFNHKRGYAELKSAFAPIVGPLGSLPPAYGELLQREERNRSGALASFFNLFAARFSELFVSATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTKGLAQKAGVAEDTLLRFSGLLASRNRNVSALTSMLCEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVEDMSGGFRVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRLGQSDAPARLGWNSWARVAPAEKDSADAVVTEREGSAISV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9778 | - | - |
Protein sequence: 335 a.a.
>T6CP015587 NZ_CP033035:c1430106-1429102 [Agrobacterium fabrum] [TssG]
MDQQIPTMKDRQAALLSDDPGRFEPTTAFRVAQFVAADDGVVIGAHGGTQPTPLAVSGFNHKRGYAELKSAFAPIVGPLG
SLPPAYGELLQREERNRSGALASFFNLFAARFSELFVSATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTKGLAQKAG
VAEDTLLRFSGLLASRNRNVSALTSMLCEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVEDMSGGF
RVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRLGQSDAPARLGWNSWARVAPAEKDSA
DAVVTEREGSAISV*
MDQQIPTMKDRQAALLSDDPGRFEPTTAFRVAQFVAADDGVVIGAHGGTQPTPLAVSGFNHKRGYAELKSAFAPIVGPLG
SLPPAYGELLQREERNRSGALASFFNLFAARFSELFVSATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTKGLAQKAG
VAEDTLLRFSGLLASRNRNVSALTSMLCEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVEDMSGGF
RVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRLGQSDAPARLGWNSWARVAPAEKDSA
DAVVTEREGSAISV*
Nucleotide sequence: 1005 bp
>T6CP015587 NZ_CP033035:c1430106-1429102 [Agrobacterium fabrum] [TssG]
ATGGACCAGCAAATCCCAACCATGAAAGACCGGCAGGCCGCGCTTCTCAGCGACGATCCCGGCCGTTTCGAACCCACCAC
CGCGTTTCGCGTCGCCCAATTCGTCGCGGCGGATGACGGCGTCGTCATCGGTGCTCATGGCGGCACACAGCCGACACCGC
TCGCGGTCAGCGGTTTTAATCACAAGCGCGGCTATGCCGAACTGAAATCCGCTTTCGCCCCGATCGTCGGTCCGCTCGGC
TCGTTGCCGCCGGCCTATGGCGAATTGCTGCAACGGGAAGAACGTAATCGTTCCGGTGCGCTCGCGAGCTTCTTCAATCT
GTTCGCGGCAAGGTTCAGCGAGCTTTTCGTCTCCGCAACGGAGAAATATCGCCTCGCAAGAGGCCTGCGCTGGTCGGCCA
GGGAACAGGATAATGGTTTCCGCAAAACCCTGCTGGCGCTGACGGGGTTCAGGACGAAAGGACTGGCACAGAAGGCCGGC
GTTGCCGAAGACACACTTCTGCGTTTCAGCGGGCTGTTGGCCAGCCGCAACCGCAATGTCAGCGCGCTCACCTCCATGCT
GTGCGAGTTCACCGCGCTTCCGGTCACGGTCGAACAGTTTCGGCGGCGCTGGGTGGCTTTGCCGCTTCACGAACAAAGCC
AGCTCGGACAGGCCTCCGGACTGAGGCTGGGGCAGAACACAACGGCAGGAAGCGCTGTCGAAGATATGAGCGGCGGCTTC
CGGGTGGTGATCGGCCCCGTCGGCTATGCCGACTATCTGGCCCTGACGCCCGGATCGAAGCGGCTTGCGGAAATATTCGC
GCTGACGCGCCTGTTCGTTGGAAGCGCGCTGCATTTCGATGTGCAGGTGATCCTGAAAAAAGAGGACATTCCCTTTTGCC
GCCTCGGCCAGTCCGATGCGCCCGCCCGTCTCGGCTGGAACAGCTGGGCCCGCGTGGCACCCGCAGAAAAAGACAGCGCC
GATGCTGTTGTGACCGAGCGCGAAGGCTCGGCTATTTCCGTGTGA
ATGGACCAGCAAATCCCAACCATGAAAGACCGGCAGGCCGCGCTTCTCAGCGACGATCCCGGCCGTTTCGAACCCACCAC
CGCGTTTCGCGTCGCCCAATTCGTCGCGGCGGATGACGGCGTCGTCATCGGTGCTCATGGCGGCACACAGCCGACACCGC
TCGCGGTCAGCGGTTTTAATCACAAGCGCGGCTATGCCGAACTGAAATCCGCTTTCGCCCCGATCGTCGGTCCGCTCGGC
TCGTTGCCGCCGGCCTATGGCGAATTGCTGCAACGGGAAGAACGTAATCGTTCCGGTGCGCTCGCGAGCTTCTTCAATCT
GTTCGCGGCAAGGTTCAGCGAGCTTTTCGTCTCCGCAACGGAGAAATATCGCCTCGCAAGAGGCCTGCGCTGGTCGGCCA
GGGAACAGGATAATGGTTTCCGCAAAACCCTGCTGGCGCTGACGGGGTTCAGGACGAAAGGACTGGCACAGAAGGCCGGC
GTTGCCGAAGACACACTTCTGCGTTTCAGCGGGCTGTTGGCCAGCCGCAACCGCAATGTCAGCGCGCTCACCTCCATGCT
GTGCGAGTTCACCGCGCTTCCGGTCACGGTCGAACAGTTTCGGCGGCGCTGGGTGGCTTTGCCGCTTCACGAACAAAGCC
AGCTCGGACAGGCCTCCGGACTGAGGCTGGGGCAGAACACAACGGCAGGAAGCGCTGTCGAAGATATGAGCGGCGGCTTC
CGGGTGGTGATCGGCCCCGTCGGCTATGCCGACTATCTGGCCCTGACGCCCGGATCGAAGCGGCTTGCGGAAATATTCGC
GCTGACGCGCCTGTTCGTTGGAAGCGCGCTGCATTTCGATGTGCAGGTGATCCTGAAAAAAGAGGACATTCCCTTTTGCC
GCCTCGGCCAGTCCGATGCGCCCGCCCGTCTCGGCTGGAACAGCTGGGCCCGCGTGGCACCCGCAGAAAAAGACAGCGCC
GATGCTGTTGTGACCGAGCGCGAAGGCTCGGCTATTTCCGTGTGA