Detailed information of component protein


Summary

Component ID T6CP015586
Component protein type TssK
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20910
Coordinate (Strand) 1426562..1427902 (-)
NCBI ID WP_080813040.1
RefSeq NZ_CP033035
Uniprot ID UPI0009BB1EAB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-155 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MRHENRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSNLRGVLPDGTPFEAPEDSDLPPPLDLDESVKNAIIYLALPARQPGKADTSASGRNDTNNVRFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDDLSGYDLIGLARVIEVRSDRAVILDPDFIPPSLSCAAAPRLNELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQILNRADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATDFPPYRHEDLKATFGAVFDDLRTSLSAVLEQAAVAIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDIRRRLPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLPYRSGTVYFEIDTQSPLWKQLDTSGAIALHLAGEFPGLEMEMWALRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9832 - -


  Protein sequence: 447 a.a.    

>T6CP015586 NZ_CP033035:c1427902-1426562 [Agrobacterium fabrum] [TssK]
MRHENRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSNLRGVLPDGTPFEAPED
SDLPPPLDLDESVKNAIIYLALPARQPGKADTSASGRNDTNNVRFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDD
LSGYDLIGLARVIEVRSDRAVILDPDFIPPSLSCAAAPRLNELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQ
ILNRADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATDFPPYRHEDLKATFGAVFDDLRTSLSAVLEQAAV
AIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDIRRRLPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLP
YRSGTVYFEIDTQSPLWKQLDTSGAIALHLAGEFPGLEMEMWALRE*

  Nucleotide sequence: 1341 bp    

>T6CP015586 NZ_CP033035:c1427902-1426562 [Agrobacterium fabrum] [TssK]
ATGAGACATGAGAACCGTGTTGCCTGGAGTGAGGGCATGTTTCTTCGCGTTCAGCATTTTCAGCAATCTGACCGCTGGAC
CGAACGTCTGGTGCGCAACACCACGCGCAACCTTTCGCCCTACCCATGGGGCATCGCCGAGATCGGGGTCGATCGCAGCG
CATTGTCGATAGGGCAATTCGCGCTGTCGAACCTGCGCGGCGTGCTTCCCGACGGCACACCCTTCGAGGCACCTGAGGAT
TCCGACCTGCCTCCGCCGCTCGATCTCGATGAAAGCGTCAAGAACGCCATCATCTATCTTGCCCTGCCGGCCCGGCAGCC
AGGCAAGGCGGATACGTCCGCCAGCGGCCGCAATGACACGAACAATGTGCGCTTCACCGCCTCGAGCTATGAAGTCACCG
ACACCAATATCGAAACGGATTTCGTGGCCCCGATCGACGTCGGCCGCCTCAGCCTGAAATTCCTCAAAACCGGTGACGAT
CTTTCCGGTTACGATCTCATCGGGCTGGCGCGGGTGATCGAAGTCCGCTCCGACCGTGCGGTCATTCTCGATCCGGATTT
CATTCCTCCAAGCCTCAGCTGTGCAGCAGCGCCCCGCCTCAACGAATTGCTGACGGAGCTTCTTGGGATCGTCCGCCACC
GAGCCCAGGCGATTGCCGAACGCATTGGCGACCCGACGATCCGGGGAACGGCGGAAGTGGGCGATTATTTCCTGCTGCAG
ATCCTCAACCGGGCCGATCCGCTGCTCGCGCACCGCGGTGCCAATGCCACACGTTTTCACCCCATCCGCTTTTATGAAGA
CTGCATCCAGCTTGCCGGAGAGCTCGCCACCTTCACCACGGACAGGAAGCGGGCAACGGATTTCCCGCCATATCGGCACG
AAGATCTGAAAGCCACCTTCGGCGCTGTCTTTGATGATCTGCGCACCTCGCTGTCGGCGGTTCTGGAGCAGGCAGCCGTG
GCAATCGAACTGGTGGAACGTCGCCATGGCGTCCGCGTCGGCACCATCCACGACCGCACGCTTCTGCGCGATGCTGGTTT
CGTGCTGGCCGTGCGCGCGGATATGGCCGCCGAGGATATTCGCCGCCGCCTGCCGGCACAGATCAAGGTCGGACCGGTGG
AACGGATTTCCGAACTGGTCAATGTGGCGCTGCCGGGCATCCCCGTGCGGTCCCTGCCGGTCCTGCCGCGGCAACTGCCC
TATCGATCCGGCACTGTCTATTTCGAGATCGACACGCAGTCGCCACTCTGGAAACAGCTTGATACCTCAGGTGCCATTGC
CCTGCATCTGGCGGGCGAGTTCCCCGGGCTTGAAATGGAAATGTGGGCGTTACGCGAATGA