Detailed information of component protein


Summary

Component ID T6CP015583
Component protein type TagF
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (472 a.a.); Nucleotide sequence (1416 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20895
Coordinate (Strand) 1420086..1421501 (-)
NCBI ID WP_121691709.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF5C33F
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 8.9e-42 19..153
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-471 MADQASRSTQTAAESDRIGFFGKVPSHGDFISDGLERELIATFDDWMRSGMHACADMFAGRWTEIFSSSPPIRFIVESGIWGNCAYAGVLVPSADRVGRKYPLAIIAQLNGFRRHPRTLYLDDTWFMAVEALAETSMTGDFDMSRFNASIKKLRLPKPRDEDDAPEMVRGRAPTSLWWHIDPVSRRARGLKFDGKPRASDFLRLFSDMTGKGDEDGSRAAPAPATVQEKTKQQIPPVTPAPAHPAEQPSSVIYSYATHPGTRLSLNADALFVSQTPSLFAIADGQGDTHSAAEAARLATNILAETPDAENPEMMAQQIRGKLGTVNSLLLSRQATGADGRPMASVVIASIIARRLSVLWSGDARAYLLKNGTMHQLSRDHVVVGMKKQLSQCVGLSQQFRPDIVFDEWGLQDRLLLCSYPLVQILRERAIAEIVFNTPIKDCANALVQEALIENARENVSAIVIGNRREQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9792 - -


  Protein sequence: 472 a.a.    

>T6CP015583 NZ_CP033035:c1421501-1420086 [Agrobacterium fabrum] [TagF]
MADQASRSTQTAAESDRIGFFGKVPSHGDFISDGLERELIATFDDWMRSGMHACADMFAGRWTEIFSSSPPIRFIVESGI
WGNCAYAGVLVPSADRVGRKYPLAIIAQLNGFRRHPRTLYLDDTWFMAVEALAETSMTGDFDMSRFNASIKKLRLPKPRD
EDDAPEMVRGRAPTSLWWHIDPVSRRARGLKFDGKPRASDFLRLFSDMTGKGDEDGSRAAPAPATVQEKTKQQIPPVTPA
PAHPAEQPSSVIYSYATHPGTRLSLNADALFVSQTPSLFAIADGQGDTHSAAEAARLATNILAETPDAENPEMMAQQIRG
KLGTVNSLLLSRQATGADGRPMASVVIASIIARRLSVLWSGDARAYLLKNGTMHQLSRDHVVVGMKKQLSQCVGLSQQFR
PDIVFDEWGLQDRLLLCSYPLVQILRERAIAEIVFNTPIKDCANALVQEALIENARENVSAIVIGNRREQG*

  Nucleotide sequence: 1416 bp    

>T6CP015583 NZ_CP033035:c1421501-1420086 [Agrobacterium fabrum] [TagF]
ATGGCCGATCAGGCATCAAGGTCCACGCAAACAGCGGCGGAAAGCGATCGCATCGGTTTCTTCGGCAAGGTCCCCAGCCA
TGGCGATTTCATTTCCGATGGGCTCGAGCGGGAATTGATCGCTACCTTCGACGACTGGATGCGATCCGGCATGCACGCCT
GCGCGGATATGTTCGCAGGCCGATGGACAGAGATATTCTCGTCGTCGCCGCCCATACGCTTCATCGTCGAAAGCGGCATA
TGGGGAAACTGCGCCTATGCCGGCGTGCTGGTGCCGAGCGCCGACCGGGTGGGCCGTAAATATCCGCTTGCCATCATTGC
CCAGCTCAACGGCTTCCGCAGACATCCGCGAACACTCTATCTCGACGACACCTGGTTCATGGCCGTAGAGGCATTGGCCG
AGACATCGATGACCGGCGATTTCGACATGTCCCGGTTTAATGCCTCGATCAAGAAATTGCGCCTACCGAAGCCGCGGGAC
GAGGATGACGCGCCGGAAATGGTCCGCGGCCGCGCGCCGACAAGCCTCTGGTGGCACATCGATCCCGTCAGCCGCCGTGC
ACGCGGCCTCAAATTCGACGGCAAGCCGAGAGCATCCGATTTTCTGCGCCTCTTCAGCGACATGACAGGCAAAGGCGACG
AGGACGGTTCAAGAGCAGCGCCGGCGCCGGCAACGGTGCAGGAGAAGACAAAACAGCAAATACCGCCCGTGACACCCGCG
CCAGCCCACCCAGCGGAACAGCCGTCATCTGTCATCTACAGCTATGCCACACATCCGGGAACGCGGCTTTCCCTGAATGC
GGATGCACTGTTCGTTTCCCAGACGCCTTCCCTCTTCGCCATAGCGGATGGACAAGGCGATACGCATAGCGCCGCAGAGG
CCGCGCGCCTCGCCACGAATATTCTTGCTGAAACGCCAGATGCCGAAAACCCGGAGATGATGGCACAGCAGATCAGGGGA
AAGCTCGGCACCGTCAACAGCCTGCTCCTCTCCCGTCAGGCGACTGGTGCCGATGGCAGGCCGATGGCCAGCGTCGTCAT
AGCCTCGATCATCGCCCGCAGGCTGAGCGTCCTGTGGTCCGGTGATGCGCGCGCCTATCTCCTGAAAAACGGCACCATGC
ACCAGCTTTCGCGCGATCACGTCGTTGTCGGCATGAAAAAACAGCTCTCGCAATGTGTCGGGCTTTCCCAGCAATTCCGG
CCGGATATCGTCTTCGATGAGTGGGGTTTGCAGGACAGGCTACTGCTGTGCAGCTACCCGCTCGTACAAATCCTCCGAGA
ACGCGCCATTGCCGAGATCGTCTTCAACACCCCGATCAAGGATTGCGCCAATGCCCTGGTCCAGGAAGCGCTGATCGAAA
ACGCCCGTGAGAATGTCAGCGCCATCGTGATTGGAAACCGGCGTGAGCAAGGCTAG