Detailed information of component protein


Summary

Component ID T6CP015501
Component protein type TssH
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25515
Coordinate (Strand) 128555..131233 (+)
NCBI ID 686142714
RefSeq NZ_CH902589
Uniprot ID UPI00030BE99B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.8e-44 626..790
AAA_lid_9 PF17871.3 6.8e-31 357..452
ClpB_D2-small PF10431.11 8.4e-14 797..871
AAA PF00004.31 7.4e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-892 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEAQWHKEKEQIQEMIALRSRLHELVFGETNEEELVADEDSEQEQDVSPYAEMDEEAVRIAISACQEQLDVIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLQSHHKLSLSYEDSLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVDEQGTLTYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 893 a.a.    

>T6CP015501 NZ_CH902589:128555-131233 [Vibrio alginolyticus 12G01] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAK
GNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQ
VATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEA
QWHKEKEQIQEMIALRSRLHELVFGETNEEELVADEDSEQEQDVSPYAEMDEEAVRIAISACQEQLDVIRNGNPLVHFEV
GPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGK
TETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFY
QVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDE
AMTEIIHHKLNKVSQRLQSHHKLSLSYEDSLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVS
VDEQGTLTYAFS*

  Nucleotide sequence: 2679 bp    

>T6CP015501 NZ_CH902589:128555-131233 [Vibrio alginolyticus 12G01] [TssH]
ATGATAAATATAAACCTTTCTTCATTAATTCAGCGTCTACACCCGATTGCAAAAGTAGCATTAGAAGACGCCGCTGCACT
TGCAGTCTCTGAAAAAGCAAACGAAGTTCAAATTGAGCATTATTTACTGAGTCTATTAGAAAGGCCAAATAGTGATTTTG
ACGTCTTATTGAGTCATTTTGATTGTTCTGAGAACTTATTAAGACAATCGGTTCGATCCACACTCGACACCAACGCCAAA
GGAAATGGCAGCAAACCTGTTTTTTCTGCTTTATTAATCGAATGGTTGCAAGAAAGTTGGCTGGTTTCTTCTTTAGATCT
ATCCGAAACACAAATCCGCTCTGGTGCCCTGCTCCTTACTCTTGTTAGCAACCCTCTCCGTTACGGCCAACATGGTTACG
CCTCTATCCTTGAAGCGGTAAACCCTGACAGCCTTAAGCGTAACTTTGCAGAGCTAACAAGCCACTCTATTGAGGCGCAA
GTTGCTACTTCAGAAAAAACACAAGCTCGTGAAGATGGTTCAGCACTGAGCAAGTTCACAACCGACTTCACTGGTAAAGC
ACGCAAAGGCGAAATCGACCCTGTTTTCTGCCGCGACCAAGAAATCCGCCAAATCGTGGACATTCTTGCTCGTCGCCGTA
AAAACAACCCTATTGCTGTTGGTGAACCGGGCGTTGGTAAAACCGCAGTAGTAGAAGGCTTGGCACTTAAGATTGTACAA
GGTGACGTACCAGACAACCTCAAAGGTGTTGAGCTTTACGGCCTGGACATGGGTCTTCTGCAAGCTGGTGCAAGCGTAAA
AGGCGAATTCGAAAAACGCCTAAACGCAGTATTGGATGAAGTGAAAAACTCGCCAACCCCTATCATTCTTTTCATCGATG
AAGCACACACCCTTGTTGGCGGTGGTAACCAAGCGGGCGGCAGCGACGCGGCAAACTTGCTAAAACCAGCCCTAGCGCGT
GGTGAAGTGAAAACCATCGCTGCGACAACATGGTCGGAATACAAGAAGTACTTCGAGAAAGATCCTGCTCTTGCGCGTCG
TTTCCAATTGGTGAAACTCGACGAACCGTCTCCTGAGCAAGCAGCATTGATCATTCGTGGTCTGCGCCCAGCATACGAGA
AGTCACATAACGTTTACGTGCGTGACGATGCTATCACTGCTGCGGCAGCACTTTCTGCTCGTTACATCTCTGGTCGTCAA
CTGCCAGACAAAGCGATCGATGTACTAGATACGGCGTGTGCACGAGTGAACATCAGCCTTAATGCCATTCCTGCTTCTGT
TGAGACTCTGCAACAAGAACTTGCAGCTCAACAGCGCGAGCTTGAAGCACTTGAGCGTGATGCTCTGCAGCAAACTGGCG
ACAAGCACAGCCTTGCTAACATTCCAGACCTAAAACTGGCAATGGAAACAACGAAAGAAGAGCTAGCAGAACAAGAAGCG
CAATGGCACAAAGAAAAAGAGCAGATCCAAGAGATGATTGCTCTACGCTCTCGCTTACATGAACTGGTCTTTGGCGAAAC
AAATGAAGAAGAGCTTGTTGCAGACGAAGATTCAGAACAAGAGCAAGACGTCTCTCCATATGCAGAAATGGATGAAGAAG
CCGTTCGCATTGCCATTTCGGCCTGCCAAGAGCAGCTAGATGTAATCCGCAATGGCAACCCACTGGTTCACTTTGAAGTG
GGCCCAGATGAAGTTAGCCACGTCATCTCGGACTGGACTGGCATTCCTATGGGTAAGATGCTTCAAGACGAAGCAGAAAC
CACGCTAAAACTGAAAGAAAGCCTAACACAAAGCATCAAAGGCCAAGAATACGCTATCGATGCACTGTCTGAAGGCATTC
AAACTGCGAAAGCAGGCTTAGGCAACCCAGACGCACCAACAGGCGTATTCCTGCTGGTTGGCCCAAGTGGCGTGGGTAAA
ACCGAAACGGCTCGTGCGATCGCTGATCAAATGTTTGGTGGTGAGCGCTTTATGACGACCATTAACATGTCTGAGTTCCA
AGAGAAGCACACGGTATCTCGCCTAATCGGTTCACCTCCAGGTTACGTAGGTTACGGTGAAGGCGGCATGCTGACAGAAG
CGGTACGTCAGCGTCCATATTCTGTTGTACTTCTTGATGAAGTAGAAAAAGCCGACCCAGAAGTGTTGAACTTGTTCTAC
CAAGTTTTCGACAAAGGTACGCTGAACGACGGCGAAGGCCGCACCATCGACTTCAAGAACACGCTGATCATCATGACCAG
TAACCTTGCAACGCACGAGATCGAATCTTTGGTTCATCAATCAAAAGACATCGATGCAAACATCATCGCAGAAGCTATCC
GCCCTACTTTAAACCAACACTTCAAACCGGCGCTGTTGGCACGTATGTCGGTACTGCCATTTGTTCCGCTGTCTGATGAA
GCAATGACAGAAATTATTCACCACAAGTTGAACAAAGTTTCTCAGCGTCTACAGAGCCATCACAAGCTGTCTCTGAGCTA
CGAAGACAGCTTGGTTGAGTTCGTACTAGGTAACTGTCGCCTTGCTGAAACGGGCGCGCGTAACATCGACGCGGTTATCA
ACCGTCAGTTACTGCCTCAGCTCTCGACTCAGCTACTAGTGCATGACAAGGATGATTCACATACGCAAATCACAGTTTCT
GTCGATGAGCAAGGAACACTAACCTATGCGTTCAGCTAA