Detailed information of component protein


Summary

Component ID T6CP015499
Component protein type TssI
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25505
Coordinate (Strand) 125429..127507 (-)
NCBI ID 491515779
RefSeq NZ_CH902589
Uniprot ID A0A0L8C9F5_VIBAL, D0X0P4_VIBAL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.9e-78 26..331
Phage_base_V PF04717.14 2.9e-15 387..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVNDVEFKFEVPGCGHEFRVESFHVHEELSKPFHINLSLLSLDPDISFDELIRKAGTLTLYGQGVGAARVFNGVVNEVRYLGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAQDIITEVLDDGAVTDYRFEVSGTYPPKEYVLQYRESDLHFVQRMMAEHGMWYYFDHSDSNHTMVIVDSNDAIAPLISSPLNASYIGPIVYHADGGGVADREHISDLELVNRVRTGQVTYTDYNYEHPKIPQEMTQAGELDQDLKQFDYPGRYVDPLMGQVRTTEWMSEHIVDNQQVEATSDVMRLASGYSFNVSDHPRSEINRDYLMLSVMHTGQDPQVHEDEASGMPTTYYNQFSCIPRDVVFKAPKLAAPVVDGPQTAVVVGPEGEEIYTDKLGRVKVQFHWDRYGDNNEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIHGHKTTQVNSTFTETVEQDVTVTYNANEAQYVKNNSDLEIGDNRTTKIGKNDDLDIGENSNLTIGASKSSDIGADDNQTVGGNLTVSVKGNTAYKADGATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSAITIEGSDKVVVKGGNVVVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9824 - -


  Protein sequence: 693 a.a.    

>T6CP015499 NZ_CH902589:c127507-125429 [Vibrio alginolyticus 12G01] [TssI]
MVNDVEFKFEVPGCGHEFRVESFHVHEELSKPFHINLSLLSLDPDISFDELIRKAGTLTLYGQGVGAARVFNGVVNEVRY
LGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAQDIITEVLDDGAVTDYRFEVSGTYPPKEYVLQYRESDLHFVQRMM
AEHGMWYYFDHSDSNHTMVIVDSNDAIAPLISSPLNASYIGPIVYHADGGGVADREHISDLELVNRVRTGQVTYTDYNYE
HPKIPQEMTQAGELDQDLKQFDYPGRYVDPLMGQVRTTEWMSEHIVDNQQVEATSDVMRLASGYSFNVSDHPRSEINRDY
LMLSVMHTGQDPQVHEDEASGMPTTYYNQFSCIPRDVVFKAPKLAAPVVDGPQTAVVVGPEGEEIYTDKLGRVKVQFHWD
RYGDNNEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIHGHKTTQVNSTFTETVEQ
DVTVTYNANEAQYVKNNSDLEIGDNRTTKIGKNDDLDIGENSNLTIGASKSSDIGADDNQTVGGNLTVSVKGNTAYKADG
ATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSAITIEGSDKVVVKGGNVVVN*

  Nucleotide sequence: 2079 bp    

>T6CP015499 NZ_CH902589:c127507-125429 [Vibrio alginolyticus 12G01] [TssI]
ATGGTGAATGACGTAGAATTTAAATTTGAAGTGCCTGGATGTGGGCATGAATTTCGGGTTGAGAGCTTTCATGTTCATGA
AGAGTTATCTAAGCCTTTCCACATCAATCTCTCATTACTTTCACTTGATCCAGATATCTCGTTCGATGAGTTAATACGTA
AAGCAGGAACATTGACACTTTACGGACAAGGTGTTGGGGCTGCGCGTGTGTTCAACGGAGTGGTGAATGAAGTTCGTTAC
TTAGGGACTGGGCGTCGTTTTTCTCGTTATCAATTAGTCTTGGTTCCTCAAGCTTGGTTCTTATCTCAGCGCCAAGATTG
TCGTATTTTCCAGCAAAAGTCAGCGCAAGACATCATCACAGAAGTACTCGATGATGGGGCAGTCACCGATTACCGATTTG
AAGTGTCGGGTACTTATCCTCCAAAAGAATACGTTCTGCAATACCGTGAGTCTGACTTGCACTTCGTGCAGCGTATGATG
GCTGAACACGGTATGTGGTATTACTTTGACCATAGCGATTCAAATCATACGATGGTCATTGTCGACAGTAATGACGCGAT
TGCACCTTTGATAAGCTCGCCACTAAATGCTTCTTACATTGGGCCGATTGTTTATCATGCCGATGGTGGCGGTGTTGCCG
ATCGCGAACATATCTCTGATCTCGAGTTAGTTAACCGCGTTAGAACAGGACAGGTTACGTACACAGATTACAACTACGAA
CACCCTAAAATTCCACAAGAGATGACACAGGCTGGCGAGCTAGACCAAGATCTCAAGCAGTTTGATTATCCTGGACGATA
CGTTGACCCGCTGATGGGTCAGGTGAGAACCACGGAGTGGATGTCGGAACACATAGTCGATAATCAACAAGTGGAAGCAA
CGAGTGACGTAATGCGCTTAGCATCTGGTTACAGCTTTAACGTCAGTGACCACCCGCGTTCTGAGATTAACCGTGATTAC
CTTATGTTGTCTGTAATGCACACAGGTCAAGATCCGCAAGTGCATGAAGATGAAGCGAGTGGTATGCCAACCACTTACTA
CAACCAGTTCTCATGTATTCCACGTGATGTGGTGTTTAAAGCGCCTAAACTAGCAGCACCAGTGGTTGATGGCCCTCAAA
CGGCGGTTGTTGTAGGACCAGAAGGTGAAGAGATTTACACCGACAAGCTTGGTCGAGTGAAAGTACAGTTCCATTGGGAT
CGCTACGGTGATAACAACGAGCATTCAAGCTGTTGGATTCGTGTAAGCCAATCCATGGCGGCGCCAACATGGGGCGCAGT
TTATTTGCCGCGTATTGGCCACGAAGTCGTAGTAACTTTCCTTGAGGGGGATCCAGATCGTCCGTTAGTTACGGGCGCAG
TTTACAACGGTTTGCATTTCCCACCTTACTCTTTGCCAGAAAACAAAACTCGTACCACGTTCCGCACGCAAACGCACAAA
GGAACAGGTTACAACGAGTTGAGTTTTGAAGACGAAGCGAACCAAGAAGAAGTCTATATTCACGCTCAAAAAGACATGTC
GACCAAGGTGCTCAACAACCGTTACCGTGATATCGGTCAAGATGAATTCTTGAAGGTTGCACGTCACCAAACGAATGAAG
TTCATGGTGACCATAAAGAAACCATTCATGGGCATAAAACGACACAGGTAAACAGTACGTTTACCGAGACAGTCGAGCAA
GACGTTACCGTCACATACAACGCGAACGAAGCCCAGTATGTGAAAAACAATTCTGACTTAGAAATTGGTGATAACCGTAC
GACTAAGATCGGTAAAAATGATGACTTAGATATAGGCGAAAACAGTAACCTTACTATCGGTGCGTCTAAGAGTTCAGATA
TTGGTGCGGATGATAACCAGACGGTTGGTGGCAACTTAACGGTATCAGTGAAAGGGAACACCGCTTATAAAGCTGATGGT
GCAACGCAAATTATCAGTGGCGACAAGATTGTATTGAAAACGGGTGGCTCCTCTTTAGTGATGAACAGTGATGGTTCAAT
AAAGTTATCAGGCTCGGCTATTACGATCGAAGGCAGTGACAAAGTCGTCGTGAAAGGTGGCAACGTAGTGGTTAACTAA