Detailed information of component protein


Summary

Component ID T6CP015498
Component protein type TagE
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (667 a.a.); Nucleotide sequence (2001 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25480
Coordinate (Strand) 119382..121382 (-)
NCBI ID 491515752
RefSeq NZ_CH902589
Uniprot ID A0A1W6TK38_VIBAL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 5.9e-29 61..291
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-666 VSNNQSTAKGYIDQLVVKAIEKKKLNEQRLAEKNKPKLEYVLFSQFDVLDKLPSKNGKTTVYHLAKKGQPEKQICCKVINDDSPEFASKMLINEASRLELSQHPSVANFVKIGNEFERPYLMYEWIQGESLAEKMERHSSKGFRHDHIAWLVYQLAGALEFMHTRGICHLDIKPSNVLVSEGDYVKLIDFGAARYIGETEPYAEASLSYASPLYIETGIAEPQDDVYSLALLAGHLFLGSIFGDAWNKQLKDRKRPALIPVHIWKLLKEVINKPRGHGYTAISFAQQLARIDTQSISSNSNAPIFSSLRNADLLLTHCKPNDKTAYGRFKILEASLVLSVLATAGSYLYQQNKDQLDAIFSRGVTTVTHVITPSETASFLAQPPWKIKEELSQATQSIDMTEAYRTAYQAQQLSLSNLYEEKQAQLTSYQSLADGLPMALVELRKELVTLRETLVRDGALFPYADEALTKVMSGLNVASIDSMRVSAIAGSRDKQIARLILDGEAKLAENEMKEAWLLNQSQAYFYNQILPKAVMENINDSIDKHAEAHFYTKAIEEAELAKAYFGNTPELDKKIKDLIVARSEFILFSTVMEQSVYDKQKLHESLADLERNAPSKFTEITKILDSMASDAIEQSHRLSKPANGAIAVARALRDYLTEGDVNFVQH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 667 a.a.    

>T6CP015498 NZ_CH902589:c121382-119382 [Vibrio alginolyticus 12G01] [TagE]
VSNNQSTAKGYIDQLVVKAIEKKKLNEQRLAEKNKPKLEYVLFSQFDVLDKLPSKNGKTTVYHLAKKGQPEKQICCKVIN
DDSPEFASKMLINEASRLELSQHPSVANFVKIGNEFERPYLMYEWIQGESLAEKMERHSSKGFRHDHIAWLVYQLAGALE
FMHTRGICHLDIKPSNVLVSEGDYVKLIDFGAARYIGETEPYAEASLSYASPLYIETGIAEPQDDVYSLALLAGHLFLGS
IFGDAWNKQLKDRKRPALIPVHIWKLLKEVINKPRGHGYTAISFAQQLARIDTQSISSNSNAPIFSSLRNADLLLTHCKP
NDKTAYGRFKILEASLVLSVLATAGSYLYQQNKDQLDAIFSRGVTTVTHVITPSETASFLAQPPWKIKEELSQATQSIDM
TEAYRTAYQAQQLSLSNLYEEKQAQLTSYQSLADGLPMALVELRKELVTLRETLVRDGALFPYADEALTKVMSGLNVASI
DSMRVSAIAGSRDKQIARLILDGEAKLAENEMKEAWLLNQSQAYFYNQILPKAVMENINDSIDKHAEAHFYTKAIEEAEL
AKAYFGNTPELDKKIKDLIVARSEFILFSTVMEQSVYDKQKLHESLADLERNAPSKFTEITKILDSMASDAIEQSHRLSK
PANGAIAVARALRDYLTEGDVNFVQH*

  Nucleotide sequence: 2001 bp    

>T6CP015498 NZ_CH902589:c121382-119382 [Vibrio alginolyticus 12G01] [TagE]
GTGTCTAATAATCAGAGTACAGCCAAAGGATATATCGATCAGTTGGTTGTTAAAGCTATTGAGAAAAAGAAACTGAATGA
GCAAAGGCTAGCAGAAAAAAATAAGCCGAAGCTTGAGTACGTGCTTTTTTCACAGTTTGATGTATTAGACAAGCTTCCTT
CTAAAAATGGTAAGACAACGGTTTACCATCTTGCAAAAAAAGGGCAGCCAGAGAAGCAAATCTGTTGCAAAGTTATCAAT
GATGACTCGCCAGAATTTGCGAGCAAAATGTTGATTAACGAAGCGAGCAGGCTGGAGCTTTCTCAACACCCTAGCGTGGC
TAACTTTGTAAAAATCGGCAACGAATTCGAACGCCCATATTTGATGTACGAGTGGATCCAAGGTGAGTCACTGGCAGAAA
AAATGGAGCGTCATTCTTCTAAAGGCTTCCGCCACGACCACATCGCTTGGTTGGTGTATCAACTCGCTGGCGCTCTAGAG
TTTATGCATACAAGAGGTATCTGCCATCTTGATATTAAACCATCTAACGTATTAGTGAGTGAAGGCGATTACGTTAAGCT
CATTGATTTCGGCGCTGCTCGTTACATTGGAGAGACAGAACCTTACGCAGAAGCAAGCTTGAGCTACGCTTCCCCTCTTT
ATATAGAAACTGGCATCGCGGAACCGCAAGATGATGTTTACTCTCTCGCTTTGCTCGCTGGACATCTATTTTTAGGCTCA
ATATTTGGTGATGCTTGGAATAAGCAGTTAAAAGACCGAAAGCGTCCAGCTTTGATCCCGGTTCATATTTGGAAATTGCT
GAAAGAAGTCATCAACAAACCAAGAGGGCATGGCTATACCGCTATTTCTTTTGCTCAACAGTTAGCGCGAATCGATACGC
AATCAATTAGCTCAAATTCTAACGCACCAATTTTCAGTAGCTTGCGTAACGCGGATTTGCTGCTTACACACTGTAAGCCA
AATGATAAAACGGCGTATGGTCGCTTTAAAATATTAGAGGCGAGCTTAGTGTTGAGTGTGCTGGCAACAGCAGGAAGTTA
TTTGTATCAACAGAATAAAGATCAATTGGATGCCATTTTTTCCCGAGGTGTCACTACTGTAACTCACGTTATTACGCCCT
CTGAAACGGCTTCTTTTTTGGCTCAGCCTCCATGGAAAATCAAAGAAGAATTGTCTCAAGCTACTCAGAGTATTGATATG
ACAGAAGCTTATCGAACAGCATATCAAGCTCAGCAGTTAAGCCTCTCGAATTTATATGAAGAAAAACAGGCTCAGTTAAC
GTCGTATCAATCGTTAGCGGATGGCTTACCAATGGCATTAGTCGAATTACGTAAGGAGCTTGTCACCTTGCGAGAAACCC
TTGTTCGTGACGGTGCCCTGTTTCCATATGCAGATGAGGCGTTGACTAAAGTGATGTCTGGGTTAAATGTCGCGTCTATC
GATTCCATGAGAGTATCTGCCATAGCTGGCAGTCGAGATAAGCAGATTGCTCGCTTAATTTTAGATGGTGAAGCTAAGCT
CGCAGAAAATGAAATGAAAGAGGCATGGTTGTTAAACCAGTCACAAGCCTATTTCTACAACCAAATCTTACCAAAGGCTG
TGATGGAAAATATTAATGACTCCATCGATAAACATGCAGAGGCGCACTTTTACACCAAAGCAATTGAAGAAGCTGAATTA
GCCAAAGCCTACTTCGGGAATACGCCAGAACTAGACAAAAAAATAAAAGATTTAATCGTCGCAAGAAGCGAATTTATTTT
GTTTAGCACCGTGATGGAGCAATCCGTTTACGACAAACAAAAGCTACATGAATCCCTTGCCGATTTAGAACGGAATGCAC
CAAGTAAATTTACAGAAATCACGAAAATTCTAGATAGCATGGCGTCGGATGCGATAGAGCAGAGCCATCGATTATCTAAG
CCAGCAAATGGCGCAATTGCGGTAGCGCGTGCGTTGAGAGATTACTTGACTGAAGGAGACGTGAATTTTGTCCAACATTG
A