Detailed information of component protein


Summary

Component ID T6CP015496
Component protein type TssB
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) V12G01_RS25470
Coordinate (Strand) 117288..117794 (-)
NCBI ID WP_005373381.1
RefSeq NZ_CH902589
Uniprot ID A0A4P8G4C5_9VIBR, A0A2I3CQF3_VIBAX, A0A0L8C9C3_VIBAL, D0WYE3_VIBAL
KEGG ID vag:N646_3986, vnl:D3H41_19830
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 6.9e-59 6..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-168 MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGMSPNVKVNVENRLSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGNDQDAKEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9841 - -



  Protein sequence: 169 a.a.    

>T6CP015496 NZ_CH902589:c117794-117288 [Vibrio alginolyticus 12G01] [TssB]
MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGMSPNVKVNVENR
LSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
NDQDAKEE*

  Nucleotide sequence: 507 bp    

>T6CP015496 NZ_CH902589:c117794-117288 [Vibrio alginolyticus 12G01] [TssB]
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGCGATACGCAAGAAGA
CGTAGAGCTGCCGCTAAGCATGATGGTAGTTGGCGACTTTACTGCGCGTGCAGATGAGACACCAATTGAAGAACGTACTC
CAATTAACATCGACAAAGACAACTTTAACGAAGTGCTAGAGGGCATGTCTCCAAACGTTAAAGTCAACGTTGAAAACCGT
CTTTCTGATGAAGAAGGCGGCCAGATTGGTGTTGATCTGACGTTCCAAAATATGAAGGACTTCTCTCCTGAAGCGATCGC
GAAAAGTGTACCTGAACTAAACAGCCTACTTGAGCTTCGCGAAGCCTTGGTTGCACTGAAAGGTCCTCTAGGAAATGTTC
CTGCGTTCCGTAAGAAGATCGCATCGGTTCTTCAAGATGAAGAAGCGAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
AACGACCAAGACGCGAAAGAAGAGTAA