Detailed information of component protein


Summary

Component ID T6CP015493
Component protein type TssF
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (583 a.a.); Nucleotide sequence (1749 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25455
Coordinate (Strand) 113573..115321 (-)
NCBI ID 491515741
RefSeq NZ_CH902589
Uniprot ID A0A1W6V7G9_VIBAL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7e-158 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-582 MSNSKYFQDELTYLRESGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMRSIPSLCISELKPHTGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVNLYPITITNIEQTNSRTSSMIDVTLSTEHGLELSRIGLDTLRLHLHGEIHITRTVFLWLFRYLDHVELDVGGGYKHRLGPEYVKPVGHEEDEALLPYSKNSFAGYRLLQEFFSLPDKFMFFDIKGLEWLKGIPQRSTVKIKFHFKRALPSEVVLKDKHLRLHCTPAVNLFEKDGDPIRLEHRRNEYKVRPQSNTQEHYEVYSIEQVESWSKDERRRKPLIEFESFEHQINQRDKREFYKSKVGERVSGRGLERYISFHTHNGDIADLGTETVLMKLQCSNADLAERLSVGDITYATHKSPTYATFKNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDFHSRIDRQAHRASIHRLDGIISSEMKPIDRVFRGVSVRGNQFKLVTDSKFFVNEGDMFLMATVLNEFIRLYSSVNSFTELEVFDEATGEVYNWASLIGQQTIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 583 a.a.    

>T6CP015493 NZ_CH902589:c115321-113573 [Vibrio alginolyticus 12G01] [TssF]
MSNSKYFQDELTYLRESGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMR
SIPSLCISELKPHTGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVNLYPITITNIEQTNSRTSSMIDVTLSTEHGLEL
SRIGLDTLRLHLHGEIHITRTVFLWLFRYLDHVELDVGGGYKHRLGPEYVKPVGHEEDEALLPYSKNSFAGYRLLQEFFS
LPDKFMFFDIKGLEWLKGIPQRSTVKIKFHFKRALPSEVVLKDKHLRLHCTPAVNLFEKDGDPIRLEHRRNEYKVRPQSN
TQEHYEVYSIEQVESWSKDERRRKPLIEFESFEHQINQRDKREFYKSKVGERVSGRGLERYISFHTHNGDIADLGTETVL
MKLQCSNADLAERLSVGDITYATHKSPTYATFKNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDF
HSRIDRQAHRASIHRLDGIISSEMKPIDRVFRGVSVRGNQFKLVTDSKFFVNEGDMFLMATVLNEFIRLYSSVNSFTELE
VFDEATGEVYNWASLIGQQTIL*

  Nucleotide sequence: 1749 bp    

>T6CP015493 NZ_CH902589:c115321-113573 [Vibrio alginolyticus 12G01] [TssF]
TTGAGTAACAGTAAATACTTTCAAGATGAACTCACGTATTTACGCGAGTCGGGTAGTGAGTTTGCCAAATATCATCCGAA
GTTAACTCACTTTCTCTCTGAAGGAACTTTTGATCCAGATGTCGAACGATTGCTGGAAGGTTTTGCTTTTTTGACCGGAC
GCATCCGCGAAAAGATTGACGATGAACTGCCTGAGCTTACGCAATCTCTGATGACTTTGCTGTGGCCACATTACATGCGT
TCGATTCCGTCTTTGTGTATTAGCGAACTAAAACCGCATACCGGAAGTGTTACTGAGAAAACCGTGGTGAAACGTGGTGC
GGAAATGGCCAGCGAGCAGGTAGAAGGCACGCAGTGTTTGTTCCGTACTTGTTATGACGTCAATCTATACCCAATTACGA
TTACTAACATCGAACAAACTAACAGCCGCACCAGCTCGATGATTGATGTGACGTTATCGACGGAGCATGGCCTTGAGCTG
TCTCGGATAGGTTTAGACACGCTGCGATTGCACCTGCATGGTGAGATTCATATTACTCGCACTGTCTTCTTATGGCTGTT
CCGTTATCTAGATCACGTCGAGTTGGATGTTGGTGGCGGCTACAAACATCGTTTAGGGCCAGAATACGTTAAGCCAGTCG
GGCATGAAGAGGACGAGGCGCTGTTGCCTTACAGCAAAAATTCCTTTGCAGGCTACCGTTTGCTGCAAGAATTCTTCTCT
TTGCCAGATAAGTTCATGTTCTTCGACATTAAAGGCTTAGAGTGGCTAAAAGGCATTCCACAGCGCAGTACGGTCAAAAT
CAAATTCCACTTTAAGCGTGCTTTGCCTTCAGAGGTGGTGCTTAAAGATAAACACTTAAGGTTGCACTGCACACCTGCCG
TTAACTTGTTTGAAAAAGACGGCGATCCAATCCGTTTAGAGCATCGACGAAACGAGTACAAGGTGCGTCCACAAAGTAAC
ACTCAGGAGCATTACGAGGTTTATTCTATTGAGCAAGTGGAGAGTTGGAGTAAAGACGAGCGTCGCCGAAAACCACTGAT
TGAATTTGAATCGTTTGAGCACCAAATCAACCAGCGTGATAAGCGAGAGTTCTACAAATCCAAAGTGGGCGAGCGAGTAA
GCGGAAGAGGGTTAGAGCGCTATATCTCATTCCATACTCACAATGGCGACATTGCGGATTTAGGGACTGAAACCGTATTG
ATGAAACTGCAATGCAGTAACGCGGACTTAGCGGAGCGCCTGTCAGTAGGAGACATCACTTACGCAACGCACAAATCGCC
AACGTATGCGACGTTTAAAAACATTACTAAGCCAACACAGTCAGTAAGTCCTCAGGTTAATGGTGAACTTCAATGGCAGT
TGATTGCCAACATGTCGCTCAACTACTTGTCTTTGGCCAATATCGATGTGTTGAAAGTGTTGCTCTCGACTTACGACTTC
CACTCTCGAATCGATAGACAAGCCCACCGCGCGTCGATTCATCGACTTGATGGCATTATTTCTTCAGAGATGAAACCAAT
CGATCGCGTATTTCGTGGTGTATCTGTGCGTGGTAACCAATTCAAGCTCGTGACGGACTCTAAGTTCTTCGTAAATGAAG
GCGATATGTTCCTTATGGCCACGGTATTGAATGAATTTATCCGTTTGTATTCGAGTGTGAACTCCTTTACCGAACTAGAG
GTGTTCGATGAAGCGACGGGCGAGGTTTACAACTGGGCAAGCCTAATCGGGCAGCAGACAATACTATGA