SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015492
Component protein type	TssG
T6SS ID (Type)	T6SS01224 (Type i1)
Strain	Vibrio alginolyticus 12G01
Replicon	chromosome
Sequence	Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference	[1] Salomon D, Kinch LN, Trudgian DC, et al. Marker for type VI secretion system effectors. Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9271-6. doi: 10.1073/pnas.1406110111. Epub 2014 Jun 9. PMID: 24927539 [2] Salomon D, Klimko JA, Trudgian DC, et al. Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria. PLoS Pathog. 2015 Aug 25;11(8):e1005128. doi: 10.1371/journal.ppat.1005128. eCollection 2015 Aug. PMID: 26305100

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	V12G01_RS25450
Coordinate (Strand)	112578..113576 (-)
NCBI ID	491515740
RefSeq	NZ_CH902589
Uniprot ID	A0A0L8C985_VIBAL
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	5e-86	10..317

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-332	MINTLSDKSNEFSFYQAVLLLEKHYQLEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMDFITHMERNGQQYSRIETNFLGLHGSSSPLPASYTEKLVGRDPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYKSGASDAFSGRILHLAGLSSVMQDCEVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPNVRIEEWVYRRVEIAESQRNKLNRSNCVLGQSLHLGQSIADLNGKFNLCIDNIDFETFKQFSYDGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPENKLGNGEGNQLGQTFWLGNPGDKDAKIRLIGSI

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9967	-	-

Protein sequence: 333 a.a.

						>T6CP015492 NZ_CH902589:c113576-112578 [Vibrio alginolyticus 12G01] [TssG]
MINTLSDKSNEFSFYQAVLLLEKHYQLEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMDFITHMERNGQQYSRIET
NFLGLHGSSSPLPASYTEKLVGRDPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYKSGASDAFSGRILHLAGLSSVM
QDCEVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPNVRIEEWVYRRVEIAESQRNKLNRSNCVLGQSLHLGQSI
ADLNGKFNLCIDNIDFETFKQFSYDGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPENKLGNGEGNQLGQTFWLGNPG
DKDAKIRLIGSI*					

Nucleotide sequence: 999 bp

						>T6CP015492 NZ_CH902589:c113576-112578 [Vibrio alginolyticus 12G01] [TssG]
ATGATTAATACACTTTCTGATAAGTCGAATGAGTTTAGTTTCTACCAAGCGGTGTTGCTGTTAGAGAAACACTACCAGCT
GGAGCCAAACTCAAACTTTGTTGCCGTGGGCGAGAACAAATACTTCCATCAAGAGCGAATTGAGTTCAGCGTGTCGCCAA
ACCTGTGCTTTCCAAAGAGTGATATGGATTTTATTACTCATATGGAAAGAAACGGACAGCAATATTCACGTATTGAGACG
AACTTTCTTGGCTTGCATGGTTCAAGCTCGCCCCTACCTGCGTCTTACACTGAGAAACTCGTCGGTCGTGATCCCGATGA
TAACCCAGTGAAGGATTTCTTCGACTTTTTCCACAACCGCTATACAAGCTTACTGTATCGTGTTTGGAAGAAATACCGAT
ATCACGTGCAGTACAAAAGCGGGGCAAGCGATGCGTTTTCTGGGCGCATACTGCATTTGGCTGGTCTCTCTAGCGTTATG
CAAGATTGCGAAGTCGCGGAGTTAGATCGAGCGAAAGTTCTGTCTTACGTGAACCAGTTATCTACGCGTACACGTTCACC
TAAGCTTATTTCCGGTATTGTTTCACACTACTTTTCACTGCCGAATGTGCGAATCGAAGAATGGGTTTATCGGCGGGTCG
AGATTGCAGAAAGCCAACGCAACAAACTCAACCGCTCCAATTGTGTATTGGGGCAAAGCTTACACTTGGGACAAAGCATT
GCGGATTTGAACGGCAAGTTTAACTTGTGTATCGACAACATCGATTTTGAAACGTTTAAGCAGTTTTCCTACGATGGTGA
GTTACATAAGACGCTGGTGGGCTTGATGCGCTTTATTCTGCGTGACCCAATGTCGTGGGACCTAAAGTTGACAGTTAACT
TAGACAGTATTCCAGAAAACAAACTGGGTAATGGGGAAGGGAACCAACTAGGTCAAACCTTCTGGCTTGGCAACCCAGGT
GATAAAGACGCCAAAATTCGACTTATCGGAAGCATATAA					