Detailed information of component protein


Summary

Component ID T6CP015490
Component protein type TssA
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (438 a.a.); Nucleotide sequence (1314 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25435
Coordinate (Strand) 107309..108622 (+)
NCBI ID 491515730
RefSeq NZ_CH902589
Uniprot ID A0A1W6UT56_VIBAL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.1e-24 9..119
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-236 MFFTDFARRPIDENNPSGSNPNGSEDFDEIKRQINNLNKVTGRVSWKTVQTLSKKILSTQAKDLRCCCYFTVASTYNDGLRGLVEGLNSILDVCVVYWFNAYPEHSKPKARMSAIEWMVEHTEKRINKHRALPEELPLIEAAHQLCLRIEEELRLHYGIEAPSLGRIRRILNQWIEQIKEQQIAAELREKKQANTSAPAATQKAPEIKVNVSPSPAPVSSPNLNSQEKASPAKSGR
Transmembrane helix 237-256 FMIYFVIGLIVTAICSHFMY
Inside 257-437 EQQRYRTLEQKINQASLNELVNLVASLDYENKKYAQSLKTQAINRVDIMMNNWFLDSAKVSNVSELDSLTNELIAIYPDSSSAQQLRQNFLTQSAHLEDQFMDVYKRFSDARTVFANVARQNVDKNSEKAYEYSNSLFPLLGRIEYAEKYSQQKEIDRATLLLNIYLYKLSQLQAEKTDNK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9382 - -


  Protein sequence: 438 a.a.    

>T6CP015490 NZ_CH902589:107309-108622 [Vibrio alginolyticus 12G01] [TssA]
MFFTDFARRPIDENNPSGSNPNGSEDFDEIKRQINNLNKVTGRVSWKTVQTLSKKILSTQAKDLRCCCYFTVASTYNDGL
RGLVEGLNSILDVCVVYWFNAYPEHSKPKARMSAIEWMVEHTEKRINKHRALPEELPLIEAAHQLCLRIEEELRLHYGIE
APSLGRIRRILNQWIEQIKEQQIAAELREKKQANTSAPAATQKAPEIKVNVSPSPAPVSSPNLNSQEKASPAKSGRFMIY
FVIGLIVTAICSHFMYEQQRYRTLEQKINQASLNELVNLVASLDYENKKYAQSLKTQAINRVDIMMNNWFLDSAKVSNVS
ELDSLTNELIAIYPDSSSAQQLRQNFLTQSAHLEDQFMDVYKRFSDARTVFANVARQNVDKNSEKAYEYSNSLFPLLGRI
EYAEKYSQQKEIDRATLLLNIYLYKLSQLQAEKTDNK*

  Nucleotide sequence: 1314 bp    

>T6CP015490 NZ_CH902589:107309-108622 [Vibrio alginolyticus 12G01] [TssA]
ATGTTTTTTACCGACTTCGCTCGAAGACCAATCGATGAAAATAACCCAAGCGGCTCTAATCCTAATGGTTCTGAGGATTT
TGACGAAATTAAACGTCAAATAAACAACCTGAATAAAGTCACAGGGAGAGTCTCGTGGAAAACGGTTCAAACACTCTCAA
AAAAGATCTTGAGTACCCAAGCGAAAGACCTACGTTGTTGCTGTTACTTTACCGTTGCGTCAACCTATAACGACGGCTTA
AGAGGCCTTGTTGAAGGGTTAAACTCAATACTTGATGTGTGTGTCGTATATTGGTTCAACGCGTATCCAGAGCATTCAAA
GCCAAAGGCACGAATGAGCGCTATTGAATGGATGGTAGAGCATACTGAAAAACGAATTAATAAGCATCGGGCGTTACCAG
AAGAGCTTCCATTGATAGAGGCAGCACATCAATTATGCTTGAGGATTGAGGAAGAGCTTCGTCTTCATTACGGTATTGAA
GCGCCGTCATTAGGTCGCATTCGCCGTATTTTGAATCAATGGATTGAGCAGATAAAAGAACAACAAATTGCGGCTGAGTT
ACGCGAGAAAAAACAAGCCAACACTAGCGCTCCTGCAGCAACGCAGAAGGCACCTGAAATTAAAGTGAATGTGTCTCCCT
CTCCGGCACCGGTGTCATCACCCAACCTAAATAGCCAAGAGAAAGCATCACCGGCAAAGTCTGGTCGATTTATGATCTAC
TTCGTTATTGGTTTGATTGTTACTGCGATATGTTCACATTTCATGTACGAGCAACAACGTTATCGAACATTGGAACAAAA
AATTAATCAAGCTTCACTTAATGAACTTGTAAATTTGGTCGCCTCGTTAGATTACGAAAATAAAAAATATGCTCAGTCAT
TGAAAACGCAGGCGATTAATCGTGTCGATATTATGATGAATAACTGGTTTTTGGACTCGGCAAAAGTAAGTAACGTCAGC
GAGCTCGATAGCTTGACCAATGAATTAATCGCGATCTATCCGGATTCGTCTTCTGCACAGCAGCTACGTCAAAACTTTTT
GACACAGAGCGCCCATTTAGAAGACCAGTTTATGGATGTTTATAAGCGATTCTCAGACGCAAGAACGGTGTTTGCCAACG
TAGCTAGACAGAATGTAGATAAGAACTCTGAAAAGGCGTACGAATACAGTAACTCGTTATTCCCGCTTTTAGGTCGTATT
GAATACGCTGAAAAGTATTCACAGCAAAAGGAAATTGACCGCGCAACCCTTTTACTGAACATCTACCTATATAAATTGAG
TCAGCTACAAGCTGAAAAAACTGACAATAAATAA