Detailed information of component protein


Summary

Component ID T6CP015488
Component protein type TssJ
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) V12G01_RS47885
Coordinate (Strand) 104211..104711 (-)
NCBI ID 491528493
RefSeq NZ_CH902589
Uniprot ID UPI0001BDF358
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 2.7e-30 34..150

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-166 MRSIAVLLGFAMLSGCSMWDQFKESTGITPETSSIELVIEASPVLNVRNGGQSSPVILRLHELSSPVLFRSLDFFALFESDKASLGDEYIKRYEYQIQPGGKVHEMLTLDPDTRAVGFSVAFRDIDGSSWRKVEVIEEKSEYYIKLKLEGSELISDNTRGIEQVYF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9985 pos: 15-16. LSG-CS. MRSIAVLLGFAMLSG



  Protein sequence: 167 a.a.    

>T6CP015488 NZ_CH902589:c104711-104211 [Vibrio alginolyticus 12G01] [TssJ]
MRSIAVLLGFAMLSGCSMWDQFKESTGITPETSSIELVIEASPVLNVRNGGQSSPVILRLHELSSPVLFRSLDFFALFES
DKASLGDEYIKRYEYQIQPGGKVHEMLTLDPDTRAVGFSVAFRDIDGSSWRKVEVIEEKSEYYIKLKLEGSELISDNTRG
IEQVYF*

  Nucleotide sequence: 501 bp    

>T6CP015488 NZ_CH902589:c104711-104211 [Vibrio alginolyticus 12G01] [TssJ]
ATGCGTAGTATCGCCGTATTACTCGGATTTGCCATGTTGTCCGGTTGTTCCATGTGGGATCAATTTAAAGAGTCCACTGG
TATCACACCAGAAACTTCGTCGATTGAATTGGTTATTGAGGCATCACCTGTACTCAATGTGAGAAATGGGGGCCAGTCAT
CTCCAGTTATTCTCCGTCTTCACGAATTAAGTTCGCCAGTATTGTTCCGAAGCTTAGATTTCTTTGCCTTGTTTGAGAGC
GATAAAGCGTCGTTGGGTGATGAGTACATCAAACGTTACGAATATCAAATACAGCCAGGTGGAAAAGTTCATGAAATGCT
AACGCTAGACCCTGACACTCGTGCCGTCGGTTTTTCAGTGGCTTTTCGTGATATTGATGGTTCGTCATGGCGAAAAGTGG
AAGTTATTGAAGAGAAGAGCGAGTACTACATCAAGCTCAAGTTAGAGGGCAGTGAGTTAATTTCTGATAACACTCGCGGC
ATTGAACAGGTTTACTTTTAA