Detailed information of component protein


Summary

Component ID T6CP015487
Component protein type TssK
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25425
Coordinate (Strand) 102874..104199 (-)
NCBI ID 491515724
RefSeq NZ_CH902589
Uniprot ID A0A2I3CPS8_VIBAX, A0A0H0YHF7_VIBAL, D0WYF4_VIBAL
KEGG ID vag:N646_3997
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.9e-137 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSLLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLLAELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTMESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAYTSIPILKISEVKPDGSVILDDSFIPTCIDIHASTVLSKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFASTEAVHPESLYRILLQAEGELSTLCSTTRRPIEFTKYNHGDLTSCLSRVLDSAKMTLSVMSEQRAIPLTLKDQNYGIRTAAIPDNKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGYTYFELDKTGEEWMALKNTAAIAIHVAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9886 - -


  Protein sequence: 442 a.a.    

>T6CP015487 NZ_CH902589:c104199-102874 [Vibrio alginolyticus 12G01] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSLLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLL
AELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTMESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAY
TSIPILKISEVKPDGSVILDDSFIPTCIDIHASTVLSKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFASTEAVHPESLYRILLQAEGELSTLCSTTRRPIEFTKYNHGDLTSCLSRVLDSAKMTLSVMSEQRAIPLTLK
DQNYGIRTAAIPDNKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGY
TYFELDKTGEEWMALKNTAAIAIHVAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP015487 NZ_CH902589:c104199-102874 [Vibrio alginolyticus 12G01] [TssK]
ATGTCTTTATACAATCCAGTTGTTTGGCAAGATGGAATGTTCATGAAGCCGCAGCATTTTCAACAACTCGATCGTTCGCA
AAGTAAACTATCGAGCCTACTGAGTGCCAATGCATCGCCTTTGCATTGGGGAATTAAACGTTTAGAAATCAACTCTCAGT
TACTAGCACTGGGTAAAATCGGTATTACTCGTGCTGAAGGTATTTTACAAGACCGGACACCATTTGAGCTTCCGTTGCTT
GCTGAGCTGCCTGAAGTGAAAGATGTAGATCCTTCGATTGCCGATAAAGTCGTTTATTTGTGCTGTCCGTTACCATCGGA
ACGTTCTGAGTTGTTTGGTACCAAAAAAGACGGTGCGCGCTATACGATGGAATCTCAAGAAGCGGTTGACGCTTGTTATG
ATTCGGAAGACATGGCAAATATCGTCGTCGGTAAGCTTAACTTTTGCTTAATGTACGATCATGAAGATAAGAGTGCTTAC
ACGTCTATTCCGATCTTAAAGATCTCAGAAGTGAAGCCTGATGGCAGCGTGATCTTAGATGATAGTTTCATTCCTACCTG
TATCGATATTCATGCGTCGACAGTACTGAGTAAATTTGCGACCGAGTTTGCTTCTATGTTGAAGCATCGCGCGGAATCGA
TAGTTCAGCGATTAGGGGTGGTGGATCAACAAGGCGTATCATCGGTTTCTGACTTTATGCTATTGCAAGCGCTCAACCGA
TACGAACCCTTGTTTTGGCATTTCGCCAGCACAGAAGCTGTGCATCCTGAGTCTTTGTATCGAATTCTTCTTCAGGCAGA
AGGTGAGCTTTCGACGCTGTGCTCAACGACACGCCGACCTATTGAGTTTACGAAGTACAATCATGGTGATCTTACTAGCT
GTCTTTCTCGCGTCCTAGACAGTGCAAAAATGACATTGAGCGTGATGTCTGAGCAAAGAGCAATTCCACTGACCTTAAAA
GATCAGAACTATGGCATCAGAACGGCAGCAATCCCTGACAATAAGATCATTGATACGACAACCTTTATCCTCGCAGTTAA
AGCCGACGTGACCTTGGATGTTCTGCATACCCAGTTTGTCAGCCAAACGAAGATCGGTTCTATCGATAACATACGTGACT
TGATTAACCTTCAACTGCCTGGGATTGAGATCAAACCAATGCCAGTTGTGCCACGCGCGCTGCCGTATCACGCTGGCTAC
ACCTATTTCGAGCTCGATAAAACGGGCGAAGAGTGGATGGCATTGAAGAACACTGCTGCGATTGCGATTCACGTTGCGGG
CGATTTCGCTAACTTATCATTGCAACTTTGGGCCGTTCGTCTATGA