Detailed information of component protein


Summary

Component ID T6CP015485
Component protein type PAAR
T6SS ID (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (486 a.a.); Nucleotide sequence (1458 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS25415
Coordinate (Strand) 100481..101938 (-)
NCBI ID 491515718
RefSeq NZ_CH902589
Uniprot ID UPI0000D54591
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF4150 PF13665.8 1.1e-35 22..127
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-485 MGVTVGANGLSIVHKGSGGEANATLPDVCLTKVGKPVVPIPYGNNAKSADLAGGTTTVSMDGGNSVAIKGSTFSKSTGDAGGDRKGVASGTIEAEAKFISASPTVKFEGKGVCRLSDQMTMNKANTVCLGGAQNPSVSVSEEQEGTYTLDIECKYPNGLPYSNAQFSLVEPSGAVIGSGVLDSSGKASVNGLALKECKLVLSETQDSYTPNQSLAENIVTETYPDPNDFCTFVAGRRSPFWEDRVGVANDWGILMSPSFSDDDFKDIVLEQSRISSPYAISQNHSKDFSDAYVSALYHIQTDTTALEKYEPLVELLLEQVHENGDILRVLYQADVFEPPYELLAKLRFLGTGNTVKYLQFVLWTLINNQICSYIDELNSEIIGRLDFIQSQASARSLSSVEEGINGYKKALNHFKQALPDVISQIFETKNDTLISISAMALGSTVNIASQSSFATNLGRVNAVVYTKSNNLNRPSFVTFDDNFSD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7758 - -


  Protein sequence: 486 a.a.    

>T6CP015485 NZ_CH902589:c101938-100481 [Vibrio alginolyticus 12G01] [PAAR]
MGVTVGANGLSIVHKGSGGEANATLPDVCLTKVGKPVVPIPYGNNAKSADLAGGTTTVSMDGGNSVAIKGSTFSKSTGDA
GGDRKGVASGTIEAEAKFISASPTVKFEGKGVCRLSDQMTMNKANTVCLGGAQNPSVSVSEEQEGTYTLDIECKYPNGLP
YSNAQFSLVEPSGAVIGSGVLDSSGKASVNGLALKECKLVLSETQDSYTPNQSLAENIVTETYPDPNDFCTFVAGRRSPF
WEDRVGVANDWGILMSPSFSDDDFKDIVLEQSRISSPYAISQNHSKDFSDAYVSALYHIQTDTTALEKYEPLVELLLEQV
HENGDILRVLYQADVFEPPYELLAKLRFLGTGNTVKYLQFVLWTLINNQICSYIDELNSEIIGRLDFIQSQASARSLSSV
EEGINGYKKALNHFKQALPDVISQIFETKNDTLISISAMALGSTVNIASQSSFATNLGRVNAVVYTKSNNLNRPSFVTFD
DNFSD*

  Nucleotide sequence: 1458 bp    

>T6CP015485 NZ_CH902589:c101938-100481 [Vibrio alginolyticus 12G01] [PAAR]
ATGGGCGTAACAGTTGGTGCGAATGGACTTTCGATAGTTCATAAAGGCTCAGGTGGTGAAGCGAATGCAACGCTCCCAGA
TGTTTGTTTAACTAAGGTCGGCAAGCCAGTCGTTCCTATCCCTTATGGCAACAATGCTAAATCAGCAGACCTTGCAGGTG
GGACTACGACAGTCTCTATGGATGGCGGTAACAGTGTCGCTATCAAGGGCAGTACGTTCTCAAAAAGTACCGGCGATGCG
GGCGGTGACAGAAAAGGCGTTGCCTCAGGCACGATAGAAGCCGAAGCAAAATTCATTTCAGCTTCACCAACGGTTAAGTT
TGAAGGTAAGGGCGTATGTCGCCTGTCCGATCAAATGACCATGAATAAAGCCAACACTGTGTGTCTTGGCGGCGCACAAA
ACCCATCGGTTTCTGTGAGTGAAGAGCAGGAAGGGACGTATACGCTGGATATAGAATGCAAATATCCAAATGGGCTCCCT
TACTCTAATGCACAATTTTCTTTAGTCGAACCTTCAGGTGCTGTCATTGGGAGTGGAGTGCTGGATTCTAGCGGAAAAGC
ATCTGTTAATGGTCTCGCTCTAAAAGAATGCAAGTTAGTGCTCAGTGAAACTCAAGACTCTTACACCCCGAACCAATCTT
TAGCTGAAAATATTGTGACGGAAACTTACCCTGATCCGAATGATTTTTGTACGTTTGTCGCAGGTCGCCGCTCACCATTT
TGGGAAGATCGTGTTGGGGTTGCTAATGACTGGGGGATATTGATGTCCCCATCCTTCAGTGATGATGACTTTAAAGACAT
TGTGTTAGAGCAAAGCCGTATATCGTCTCCTTATGCGATTAGTCAAAATCACTCTAAAGACTTTTCTGATGCTTATGTTT
CGGCACTTTATCACATCCAAACTGATACTACTGCGCTAGAGAAATATGAACCTTTAGTTGAACTGCTCTTGGAGCAAGTG
CACGAAAATGGCGATATATTGAGAGTCTTATATCAAGCTGATGTGTTTGAGCCTCCCTATGAATTATTAGCGAAGCTTCG
CTTTTTAGGGACTGGGAATACTGTGAAGTATTTGCAGTTTGTTTTATGGACGTTGATAAACAATCAAATCTGTTCATACA
TCGATGAGCTAAACAGTGAAATCATCGGTCGTTTAGATTTCATACAAAGCCAAGCTTCTGCAAGATCGTTGAGTTCTGTT
GAAGAGGGTATAAACGGTTATAAAAAAGCACTTAACCACTTCAAACAAGCACTTCCTGACGTCATTAGCCAAATTTTCGA
AACCAAAAATGACACCCTAATTTCTATATCGGCAATGGCCCTTGGGAGTACCGTTAACATAGCGAGCCAATCTAGCTTTG
CTACTAATTTAGGTAGGGTTAATGCGGTGGTGTACACGAAGTCAAACAACTTGAACCGCCCATCATTTGTCACTTTTGAC
GATAACTTTTCTGACTAG