Detailed information of component protein


Summary

Component ID T6CP015483
Component protein type TssI
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31250
Coordinate (Strand) 1464869..1466704 (+)
NCBI ID 491518337
RefSeq NZ_CH902589
Uniprot ID UPI0000D53FE9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.8e-70 30..334
Phage_base_V PF04717.14 1.3e-17 381..461
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MKRATQDNNFIRISSPFGKDAIILNSFEYREEISELFSLRAKAYFNDQRSELNEIIGKEVTITLENNEDVSSNPRYMHGYVSAARLEGKRVSNTHKGENYKNIELLIEPKLRFAEYRKNCRIFQHKDIKEIISEVLSEHSVAFSFELTKSYPKYTYKVQYEESDLEFVRRLLSEEGLSFCFTHTKSAHTLNIFDDISFYKPGTEFLVDFDTGTAKSSHISSWHETQILTTKASQKSGYNMLKPSSNPKNTAKGESDFFTVPGSEYFEYMGEMESNDQYALRNTHAIEALQQNAYLCRGEATCRTFSVGKCFKFKKHEDKSRVGKEYVLSSVFLSAAVYNQTGQGGTGAQGVKVSFSCVDSKTILRPSVNYPKPQMKGLQTAVVTGNKDGEIYIDKHGRIKVQFHWDRVGKYDVNSSCWIRVAQNIAGNGWGSVFHPRVGQEVIVEFVNGDPDQPIVTGSLYNGSQLPPYALPEQSSQSGYKSRSVQKGTSNFNELRFDDKPGEEHIYLHAEKLFQMLVEDCVDIAVENSKTEKVTNDVNQEVGQNASLKVGKNFSNETGEVLSFNAGKSVEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 612 a.a.    

>T6CP015483 NZ_CH902589:1464869-1466704 [Vibrio alginolyticus 12G01] [TssI]
MKRATQDNNFIRISSPFGKDAIILNSFEYREEISELFSLRAKAYFNDQRSELNEIIGKEVTITLENNEDVSSNPRYMHGY
VSAARLEGKRVSNTHKGENYKNIELLIEPKLRFAEYRKNCRIFQHKDIKEIISEVLSEHSVAFSFELTKSYPKYTYKVQY
EESDLEFVRRLLSEEGLSFCFTHTKSAHTLNIFDDISFYKPGTEFLVDFDTGTAKSSHISSWHETQILTTKASQKSGYNM
LKPSSNPKNTAKGESDFFTVPGSEYFEYMGEMESNDQYALRNTHAIEALQQNAYLCRGEATCRTFSVGKCFKFKKHEDKS
RVGKEYVLSSVFLSAAVYNQTGQGGTGAQGVKVSFSCVDSKTILRPSVNYPKPQMKGLQTAVVTGNKDGEIYIDKHGRIK
VQFHWDRVGKYDVNSSCWIRVAQNIAGNGWGSVFHPRVGQEVIVEFVNGDPDQPIVTGSLYNGSQLPPYALPEQSSQSGY
KSRSVQKGTSNFNELRFDDKPGEEHIYLHAEKLFQMLVEDCVDIAVENSKTEKVTNDVNQEVGQNASLKVGKNFSNETGE
VLSFNAGKSVEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN*

  Nucleotide sequence: 1836 bp    

>T6CP015483 NZ_CH902589:1464869-1466704 [Vibrio alginolyticus 12G01] [TssI]
ATGAAAAGAGCAACTCAAGATAACAATTTCATCCGAATTTCTTCGCCATTCGGTAAAGATGCCATCATACTAAACTCGTT
TGAGTATAGAGAAGAGATCTCAGAACTTTTTTCATTGCGTGCTAAAGCTTACTTTAATGATCAACGAAGTGAGTTAAACG
AAATTATTGGTAAGGAAGTTACCATTACCCTTGAAAATAATGAGGATGTTTCTTCAAATCCTCGTTATATGCATGGTTAT
GTTTCTGCTGCAAGATTAGAAGGGAAAAGGGTTTCTAATACACATAAAGGCGAAAATTATAAAAACATAGAATTATTAAT
AGAGCCTAAATTACGTTTCGCTGAATATCGAAAAAATTGCAGAATATTTCAGCATAAAGATATAAAGGAAATTATCTCTG
AAGTACTATCGGAGCATAGTGTTGCCTTTAGTTTTGAGTTAACCAAGTCCTATCCTAAATACACATACAAAGTACAATAT
GAAGAATCAGATCTTGAATTTGTTCGACGTCTGTTATCGGAGGAGGGGCTATCATTTTGTTTTACACATACTAAGTCTGC
CCATACGCTCAATATTTTTGATGACATCAGTTTTTATAAGCCGGGTACTGAGTTTTTAGTCGATTTTGATACAGGTACGG
CGAAATCTAGCCACATTTCTTCTTGGCATGAAACGCAAATTCTGACTACTAAAGCGAGTCAAAAGTCAGGCTATAACATG
CTCAAGCCTTCTTCGAATCCTAAAAATACTGCAAAGGGTGAAAGTGATTTTTTTACAGTACCTGGAAGCGAGTATTTTGA
ATACATGGGTGAAATGGAGAGCAATGATCAATACGCACTGAGAAACACGCATGCAATAGAAGCACTACAGCAAAATGCAT
ATTTGTGTCGTGGCGAGGCTACGTGCAGAACATTCAGTGTGGGCAAGTGCTTCAAGTTTAAAAAGCATGAAGATAAATCT
CGAGTCGGCAAAGAATATGTACTGTCTTCTGTTTTTTTGTCTGCTGCTGTTTATAACCAGACTGGTCAAGGTGGGACCGG
TGCGCAAGGTGTCAAAGTCTCGTTTAGTTGTGTTGACTCAAAGACAATCCTGCGTCCTTCAGTTAACTACCCGAAACCTC
AGATGAAAGGTTTGCAAACCGCAGTAGTTACGGGGAACAAAGATGGTGAAATTTACATAGACAAACATGGCCGTATCAAA
GTTCAGTTTCACTGGGACCGTGTTGGTAAATACGATGTAAATAGTTCATGTTGGATTCGTGTTGCGCAAAATATTGCAGG
TAACGGATGGGGGTCGGTGTTTCACCCTAGAGTCGGACAAGAGGTCATCGTCGAGTTTGTTAACGGAGACCCTGATCAAC
CAATCGTTACGGGGTCACTATATAACGGTAGTCAACTCCCTCCTTACGCTTTACCAGAGCAAAGTTCTCAGAGTGGTTAT
AAATCACGCTCTGTACAAAAAGGTACATCCAATTTTAATGAGTTGCGCTTCGATGATAAGCCTGGTGAAGAGCACATTTA
TCTTCATGCTGAAAAACTGTTCCAAATGCTAGTTGAAGACTGTGTTGATATCGCCGTTGAAAACAGTAAAACCGAAAAAG
TGACCAATGATGTTAATCAAGAGGTTGGTCAGAACGCGAGCTTGAAAGTAGGTAAAAACTTTTCGAATGAAACGGGTGAA
GTACTGTCTTTTAATGCAGGAAAGAGCGTCGAGATCAAAGTAGGTGGTGCTTCTATTCAGATGTCTAGCTCTGGAGAAAT
CAATATCAAAGGTAATAAAATATCCATTAACGGCTCAGCTATTGCTCTTAAAGCTGGGCAAATTTCATTGAACTAA