Detailed information of component protein


Summary

Component ID T6CP015481
Component protein type TssH
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (856 a.a.); Nucleotide sequence (2568 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31240
Coordinate (Strand) 1461564..1464131 (+)
NCBI ID 491518334
RefSeq NZ_CH902589
Uniprot ID UPI0000D5404B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.4e-38 587..753
AAA_lid_9 PF17871.3 4.7e-28 354..444
ClpB_D2-small PF10431.11 2.5e-10 760..834
AAA PF00004.31 6.5e-09 213..326
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-855 MASLSLSALVERLSPQAKETLEQAAAMASSRTHHSIEMSHWLMMIIRHPDDIYSEVFDEFDVDKIKVETDIQKALEKYKTGCQSVPGLSAHTVTVMQNALLSATIEFNQEQLGCIHLLFAYLSDDTLVNMAGSISPELNKIEPSRLLNFKESNAPQSRSNDLAQSNANSALNQFTTDLTEQAREGKIDPVIGRDNEIRLMIDILLRRRQNNPILTGEAGVGKTAVVEGLAQKIIDGDVPPALQNVAIKSLDLALLQAGAGMKGEFENRLNNLVKEVNDAPQPIILFIDEAHGLIGGGGQAGQGDAANILKPALARGELRTIAATTWAEYKKYFEKDAALTRRFQVVKVDEPAPELAIEMLRGLLDVMAQHHDVHITNQALNAAVQLSARYINGRQLPDKAVSVLDTACSRVALSQSSTPGGLDAKRNKLKAKQAEYEHLSQENRLGASLDVQLQSVRKEIDALSNDIIELEVLWEKEKEWVSEAKSLRTQIIQEGSETARDKLQELENNLSANSQPLVFSHVNEALIAEVISDWTGIPLGKLQDDEIQAVLGLKESLCKRVVGQDHALELMSEVIKTASAQLTDETRPNGVFLLTGPSGVGKTESALAIAEKVYGSEENVTTINMSEFKEEHKVSLLLGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGSIKDGEGRDIDFKNTIIIMTANTGTETTMSLYSDPDLAPEPSALKDSLRDDLLVDFKPAFLGRVNVLPYLPLSRKVLIEITKLKLDKITTRIRKHYNADLFFDEELINDIVDNSNESGSGARVVQTTIENTLLPKISHEILHAILNDKTFDEIIVKGTTSGLDVSIV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9713 - -


  Protein sequence: 856 a.a.    

>T6CP015481 NZ_CH902589:1461564-1464131 [Vibrio alginolyticus 12G01] [TssH]
MASLSLSALVERLSPQAKETLEQAAAMASSRTHHSIEMSHWLMMIIRHPDDIYSEVFDEFDVDKIKVETDIQKALEKYKT
GCQSVPGLSAHTVTVMQNALLSATIEFNQEQLGCIHLLFAYLSDDTLVNMAGSISPELNKIEPSRLLNFKESNAPQSRSN
DLAQSNANSALNQFTTDLTEQAREGKIDPVIGRDNEIRLMIDILLRRRQNNPILTGEAGVGKTAVVEGLAQKIIDGDVPP
ALQNVAIKSLDLALLQAGAGMKGEFENRLNNLVKEVNDAPQPIILFIDEAHGLIGGGGQAGQGDAANILKPALARGELRT
IAATTWAEYKKYFEKDAALTRRFQVVKVDEPAPELAIEMLRGLLDVMAQHHDVHITNQALNAAVQLSARYINGRQLPDKA
VSVLDTACSRVALSQSSTPGGLDAKRNKLKAKQAEYEHLSQENRLGASLDVQLQSVRKEIDALSNDIIELEVLWEKEKEW
VSEAKSLRTQIIQEGSETARDKLQELENNLSANSQPLVFSHVNEALIAEVISDWTGIPLGKLQDDEIQAVLGLKESLCKR
VVGQDHALELMSEVIKTASAQLTDETRPNGVFLLTGPSGVGKTESALAIAEKVYGSEENVTTINMSEFKEEHKVSLLLGS
PPGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGSIKDGEGRDIDFKNTIIIMTANTGTETTMSLY
SDPDLAPEPSALKDSLRDDLLVDFKPAFLGRVNVLPYLPLSRKVLIEITKLKLDKITTRIRKHYNADLFFDEELINDIVD
NSNESGSGARVVQTTIENTLLPKISHEILHAILNDKTFDEIIVKGTTSGLDVSIV*

  Nucleotide sequence: 2568 bp    

>T6CP015481 NZ_CH902589:1461564-1464131 [Vibrio alginolyticus 12G01] [TssH]
ATGGCTTCACTCTCACTTTCAGCGTTGGTCGAAAGATTGTCTCCTCAGGCTAAGGAAACGCTTGAACAGGCAGCTGCTAT
GGCAAGCTCCCGAACTCATCACAGTATTGAAATGTCTCACTGGTTAATGATGATTATCCGCCATCCTGACGATATTTACT
CTGAAGTTTTTGACGAATTTGATGTCGATAAAATCAAGGTTGAAACCGATATTCAAAAGGCATTAGAAAAATACAAAACA
GGATGCCAGTCGGTGCCTGGGCTATCAGCTCATACGGTGACTGTTATGCAAAATGCCTTGTTGTCTGCAACCATTGAATT
CAATCAAGAACAGTTGGGGTGCATCCATCTTTTATTTGCCTACTTGTCTGATGATACGTTAGTCAACATGGCTGGTTCGA
TTAGTCCTGAACTAAACAAGATAGAACCATCTCGCTTATTGAACTTTAAAGAAAGTAATGCGCCTCAATCAAGATCGAAT
GACTTAGCGCAGTCAAACGCGAATTCCGCCTTGAATCAATTTACAACAGACCTTACTGAGCAAGCTAGGGAAGGTAAAAT
AGATCCGGTGATTGGTAGAGATAATGAAATTCGCCTAATGATCGATATTTTATTAAGACGCCGACAAAACAACCCGATTC
TTACGGGAGAAGCTGGTGTTGGAAAAACAGCCGTTGTTGAAGGTTTGGCGCAAAAGATCATTGATGGCGATGTACCTCCC
GCTCTGCAAAATGTGGCAATTAAGTCTCTGGATTTGGCGTTACTGCAAGCCGGCGCAGGCATGAAAGGTGAGTTTGAAAA
CAGGCTTAATAACCTTGTTAAGGAAGTAAACGACGCTCCACAGCCTATTATATTGTTTATTGATGAAGCTCATGGCCTAA
TTGGCGGTGGTGGGCAAGCGGGCCAAGGTGATGCGGCGAATATTCTGAAGCCAGCATTAGCGAGAGGTGAACTCAGAACG
ATCGCAGCAACAACGTGGGCAGAGTATAAAAAGTATTTTGAAAAAGATGCAGCTTTAACTAGGCGTTTTCAAGTCGTAAA
GGTTGATGAGCCTGCCCCTGAACTCGCGATCGAAATGTTACGAGGCTTACTTGATGTAATGGCACAACACCACGATGTTC
ATATCACTAACCAAGCTCTCAATGCAGCGGTCCAACTCTCAGCTCGATACATTAATGGTCGTCAACTGCCAGATAAAGCG
GTTTCTGTTTTGGATACGGCCTGCTCTCGAGTTGCGTTAAGTCAGTCATCTACACCGGGAGGCCTAGATGCGAAAAGAAA
TAAACTTAAAGCAAAGCAAGCTGAGTATGAGCATCTTAGCCAAGAGAATCGGCTAGGAGCATCTCTTGATGTGCAGCTGC
AAAGTGTCCGAAAAGAGATTGATGCGCTATCTAATGACATTATTGAATTAGAAGTACTTTGGGAAAAAGAAAAAGAATGG
GTAAGTGAAGCTAAGTCACTTAGAACCCAAATAATCCAGGAGGGTTCTGAGACTGCGAGAGACAAGTTACAAGAGCTTGA
AAATAACCTCTCCGCTAACTCACAGCCCTTAGTTTTTTCGCATGTAAATGAAGCGCTAATCGCAGAAGTTATTTCGGATT
GGACCGGTATACCGTTGGGTAAACTTCAGGATGATGAAATCCAAGCAGTATTGGGTTTGAAAGAAAGTTTGTGTAAGCGA
GTTGTCGGGCAGGATCACGCTTTAGAGCTCATGTCTGAAGTGATAAAAACCGCGAGTGCGCAGCTCACGGATGAGACACG
ACCAAATGGTGTATTTCTCCTGACCGGACCAAGCGGAGTGGGTAAAACCGAATCGGCTTTGGCGATTGCAGAGAAAGTGT
ATGGTAGTGAAGAAAATGTCACGACTATCAATATGTCGGAATTTAAGGAAGAGCATAAAGTCTCATTGCTATTAGGTTCT
CCTCCTGGTTATGTCGGTTATGGAGAAGGAGGTGTACTGACTGAAGCTGTTAGACGTAAACCTTATAGTGTAATTCTCCT
CGATGAAATGGAAAAAGCGCACCCTGGTGTTCAAGATATTTTTTATCAGGTATTTGATAAAGGCTCAATTAAAGACGGTG
AAGGTCGAGATATAGACTTTAAAAACACTATTATTATTATGACCGCGAACACAGGGACCGAAACGACGATGTCTTTGTAT
TCTGATCCTGATTTAGCTCCTGAGCCGTCAGCACTAAAAGATTCTTTACGCGATGATTTGTTGGTTGACTTTAAACCAGC
ATTTTTAGGGCGTGTGAATGTATTACCTTATTTGCCTCTATCAAGAAAAGTATTGATAGAAATAACAAAATTAAAGTTGG
ATAAAATTACGACTCGTATTCGTAAGCACTATAACGCTGACCTATTTTTTGATGAGGAACTAATTAATGATATTGTAGAC
AATAGCAATGAGTCTGGGAGTGGTGCGCGTGTGGTACAAACAACCATAGAAAATACATTGCTTCCGAAGATTTCTCATGA
AATATTGCATGCAATTCTTAATGATAAGACGTTTGATGAAATTATTGTTAAAGGTACAACTAGTGGACTTGATGTCTCAA
TAGTTTAA