Detailed information of component protein


Summary

Component ID T6CP015479
Component protein type TssF
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (608 a.a.); Nucleotide sequence (1824 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31230
Coordinate (Strand) 1458768..1460591 (+)
NCBI ID 491518323
RefSeq NZ_CH902589
Uniprot ID UPI0000D54074
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5.3e-183 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-607 MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVDDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLYPDFHAPIPSMSVIKMSCSNSTSSYFDVEEGERVVIGAPGYHECEFRTCYPVRMYPVDVTSGVFKNAPFKPVGSRWESNAHSVLKVQLTAQDEETPLGEMGAERLRFYLNGQSQLTFKLYQMLFQNLIGLSVVVDGKEVRPLTKRHLSEVGFSEDEKVVPYSKRSFSGARLLVEYLHFPEKFMFFDIIELGLSELDLREQVELYFYFDTNDDWLPKQVDEESLMVGCVPVINLFKSIMEPKRILPTEYDYHLSPQYQEAESNEVVSISDVTLRNWNKTYHNLPCYHAGEHTHYTNTSEIYWLMRREDKNWAGGYDEPGRETYISFVDKKHQLFSPDSRENWLMYVEAECCNRNLAQKLPFGGGLPQVSLPEVNDNFESVRCLVSLSETIRPEMDESTRWQLTKLLTLNHFTEEDGLATLKQTLNLYAFSGTAETKAVIDALTKLEFEPTTGRISQKGKAGFAHGIKIILTVSDQILPKEQIFLLGSVLSVYFSQYAEINIFTQLEIRLKSTGKSFHLWPALTGDKVLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 608 a.a.    

>T6CP015479 NZ_CH902589:1458768-1460591 [Vibrio alginolyticus 12G01] [TssF]
MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVDDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLY
PDFHAPIPSMSVIKMSCSNSTSSYFDVEEGERVVIGAPGYHECEFRTCYPVRMYPVDVTSGVFKNAPFKPVGSRWESNAH
SVLKVQLTAQDEETPLGEMGAERLRFYLNGQSQLTFKLYQMLFQNLIGLSVVVDGKEVRPLTKRHLSEVGFSEDEKVVPY
SKRSFSGARLLVEYLHFPEKFMFFDIIELGLSELDLREQVELYFYFDTNDDWLPKQVDEESLMVGCVPVINLFKSIMEPK
RILPTEYDYHLSPQYQEAESNEVVSISDVTLRNWNKTYHNLPCYHAGEHTHYTNTSEIYWLMRREDKNWAGGYDEPGRET
YISFVDKKHQLFSPDSRENWLMYVEAECCNRNLAQKLPFGGGLPQVSLPEVNDNFESVRCLVSLSETIRPEMDESTRWQL
TKLLTLNHFTEEDGLATLKQTLNLYAFSGTAETKAVIDALTKLEFEPTTGRISQKGKAGFAHGIKIILTVSDQILPKEQI
FLLGSVLSVYFSQYAEINIFTQLEIRLKSTGKSFHLWPALTGDKVLL*

  Nucleotide sequence: 1824 bp    

>T6CP015479 NZ_CH902589:1458768-1460591 [Vibrio alginolyticus 12G01] [TssF]
ATGAGTGAAGAGTTTCTCAAGTACTATAATCGCGAGTTAGCTTATTTGCGTCACAAAGGGCAAGAATTTGGGGAGCAGTA
TCCTAAGATTGCTGCGAGACTTCGTATTAGTGAGGAACAGGTTGACGATCCGCACGTAGAAAGATTGTTAGAAGGCTGCG
CATTTCTAACAGCAAGGATTAGACAAAGCTTAGACAATAGTTACCCTCAATTTACAGAGTCTTTGATGGGACAGTTATAT
CCTGATTTTCACGCCCCAATCCCGTCAATGTCAGTCATTAAAATGAGCTGTTCTAACTCCACTTCCTCTTATTTTGATGT
AGAAGAAGGCGAGCGAGTTGTTATCGGTGCTCCTGGATATCATGAGTGCGAGTTTAGAACTTGTTATCCGGTCAGAATGT
ATCCTGTTGATGTGACCTCTGGCGTTTTTAAAAATGCGCCTTTCAAGCCAGTTGGCTCACGATGGGAAAGCAATGCTCAT
TCAGTTTTGAAAGTACAGCTCACGGCTCAAGATGAAGAGACTCCTCTTGGTGAAATGGGGGCAGAACGGCTGCGCTTCTA
TTTAAACGGTCAATCTCAATTGACTTTTAAGCTCTACCAAATGCTGTTTCAAAACCTAATTGGTTTATCTGTTGTTGTGG
ATGGCAAAGAAGTTCGTCCTTTAACCAAAAGGCATCTTTCTGAAGTGGGATTTTCAGAAGATGAGAAAGTTGTGCCATAC
AGTAAAAGAAGCTTTTCAGGAGCAAGATTACTTGTTGAGTATTTGCACTTTCCTGAGAAGTTTATGTTCTTTGATATCAT
CGAACTTGGATTATCAGAGCTAGATCTTAGAGAGCAAGTCGAACTGTATTTTTACTTTGATACCAACGATGACTGGCTTC
CAAAGCAAGTGGACGAAGAAAGCTTAATGGTAGGCTGTGTGCCTGTGATCAACTTATTTAAAAGTATTATGGAGCCTAAG
CGTATTCTACCAACTGAATACGATTACCACTTGTCTCCACAATACCAAGAAGCTGAAAGTAATGAGGTTGTCTCAATTTC
TGACGTAACGTTGAGAAACTGGAACAAAACGTACCACAATTTGCCATGTTATCACGCTGGTGAGCACACGCATTATACGA
ACACTAGTGAGATTTATTGGTTGATGAGACGTGAGGATAAGAACTGGGCTGGTGGGTATGATGAGCCCGGTAGAGAAACT
TACATTTCTTTTGTTGATAAAAAACATCAATTGTTCAGCCCGGATAGCCGGGAAAACTGGTTAATGTACGTGGAAGCTGA
GTGCTGTAACCGCAACTTAGCGCAGAAACTTCCATTTGGAGGTGGGCTGCCGCAAGTATCTTTACCGGAGGTAAATGACA
ATTTCGAATCTGTTCGTTGTTTAGTTTCTTTATCAGAAACCATTCGGCCAGAAATGGATGAAAGCACACGATGGCAGTTA
ACTAAGCTTTTAACTTTAAACCATTTTACCGAGGAAGATGGTTTAGCAACTTTGAAGCAGACCCTTAACCTCTATGCATT
TTCTGGGACAGCAGAAACGAAAGCGGTAATCGATGCTTTAACTAAGTTAGAGTTTGAGCCTACTACAGGAAGAATTAGTC
AGAAAGGTAAAGCTGGATTTGCGCACGGTATAAAAATTATTTTGACGGTTTCTGATCAAATTTTACCTAAAGAGCAGATC
TTTCTCTTAGGTAGTGTTTTATCTGTTTACTTCTCGCAATATGCTGAAATTAACATTTTTACGCAGTTAGAAATAAGACT
TAAGTCCACGGGAAAGTCTTTCCATCTATGGCCCGCATTAACTGGCGATAAGGTGTTGCTATGA