Detailed information of component protein


Summary

Component ID T6CP015476
Component protein type TssC
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (504 a.a.); Nucleotide sequence (1512 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31215
Coordinate (Strand) 1455983..1457494 (+)
NCBI ID 491518320
RefSeq NZ_CH902589
Uniprot ID UPI0000D54057
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.5e-107 66..376
VipB_2 PF18945.2 1.1e-41 388..497
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-503 MELAVSLNFRDPSKLKHEFSTGGYAELDSPWLTRFNESSDLVASARIWLEGTRSRDLDSFRHSVMNTINRIDELLESQLNEILHHPEFQQLERGWVGVRYLCEQVDSRSSDSVKVKVLTATWNEISKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVVVGDYQLRCDPSKNYFDRDLSVLSKISQSAAAAFSPFIMSASPEMFGVDSFAQLSAIRDIAAQFEQEDYAKWRSLRDNDDAKFIGLTAPNVLFRQPYKSDGSRNDKFNFQEHIYDSNRDLLWGSSAYCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVAPTRSTMRVNGKNDRERCPLNLKVTERKEQELSECGFISISPIPETDMVGMTSNVSLYKPKQYAEKHISTNAKLTSMLQYTLCVSRVAHYLKVMGRDKIGGYQDAESLERDFQRWLHQYTTASDEASDELRAKYPLNEAKITVREKRETPGHYYSVIHLRPHFQLDQMVSSIKLITELSPEHMV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 504 a.a.    

>T6CP015476 NZ_CH902589:1455983-1457494 [Vibrio alginolyticus 12G01] [TssC]
MELAVSLNFRDPSKLKHEFSTGGYAELDSPWLTRFNESSDLVASARIWLEGTRSRDLDSFRHSVMNTINRIDELLESQLN
EILHHPEFQQLERGWVGVRYLCEQVDSRSSDSVKVKVLTATWNEISKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVV
VGDYQLRCDPSKNYFDRDLSVLSKISQSAAAAFSPFIMSASPEMFGVDSFAQLSAIRDIAAQFEQEDYAKWRSLRDNDDA
KFIGLTAPNVLFRQPYKSDGSRNDKFNFQEHIYDSNRDLLWGSSAYCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVA
PTRSTMRVNGKNDRERCPLNLKVTERKEQELSECGFISISPIPETDMVGMTSNVSLYKPKQYAEKHISTNAKLTSMLQYT
LCVSRVAHYLKVMGRDKIGGYQDAESLERDFQRWLHQYTTASDEASDELRAKYPLNEAKITVREKRETPGHYYSVIHLRP
HFQLDQMVSSIKLITELSPEHMV*

  Nucleotide sequence: 1512 bp    

>T6CP015476 NZ_CH902589:1455983-1457494 [Vibrio alginolyticus 12G01] [TssC]
ATGGAATTAGCAGTGTCACTTAACTTTCGCGACCCTAGCAAGCTAAAACATGAGTTCAGTACCGGAGGCTATGCTGAACT
TGATAGCCCGTGGTTGACTCGATTCAATGAATCTTCTGATCTTGTAGCGTCAGCGCGAATTTGGCTAGAAGGTACACGTT
CAAGAGATTTGGACAGCTTTCGTCATAGTGTGATGAACACAATTAACCGCATTGATGAGCTATTAGAATCTCAACTAAAT
GAAATATTACATCATCCTGAGTTTCAACAGCTCGAAAGGGGGTGGGTTGGAGTTAGGTATTTATGTGAACAGGTTGATTC
TCGTTCATCGGACTCTGTAAAAGTTAAGGTTTTAACGGCGACATGGAATGAAATCAGTAAAGATGCTTTAAAAGCCATCG
AGTTTGACCAATCAGCACTATTTAAGTTGCTCTATCAAAATGAATATGGCATGGCAGGGGGAGAACCCTTTGGTGTGGTG
GTTGGAGATTATCAGCTTCGCTGTGATCCTAGTAAAAATTATTTTGATAGAGATCTGTCTGTGTTGAGTAAGATCTCTCA
GTCTGCAGCTGCAGCATTCAGCCCATTTATCATGTCTGCATCGCCAGAGATGTTTGGTGTTGATAGTTTCGCTCAACTCT
CTGCGATAAGAGATATAGCAGCCCAATTTGAACAGGAAGATTATGCAAAGTGGCGTAGTTTGAGAGATAACGATGACGCT
AAATTTATTGGTTTGACTGCACCTAACGTCTTGTTCCGTCAGCCATACAAAAGTGATGGCTCGCGGAATGATAAATTCAA
TTTTCAAGAACACATCTACGACTCCAACCGAGATTTGCTATGGGGGAGTAGTGCGTACTGTTTTGCTGCTGTATCAATTA
GAGCATTTCAGGAACATGGTTGGTTCACGCATATGCGAGGGATTAAACAAGGCGATTACAGTCAGGGTATTATCGTCGCT
CCTACAAGGAGCACGATGCGTGTTAATGGCAAGAATGATCGTGAAAGATGTCCGTTAAACTTGAAAGTCACTGAGAGAAA
AGAACAAGAATTGTCTGAGTGCGGTTTTATTTCTATTTCTCCAATACCTGAGACTGATATGGTAGGGATGACCTCGAATG
TATCTCTCTACAAGCCCAAACAATACGCAGAAAAGCATATTTCAACGAATGCAAAACTGACATCGATGTTGCAATACACA
TTGTGTGTATCGCGAGTCGCACATTATCTCAAGGTTATGGGGCGTGACAAAATTGGTGGGTATCAAGACGCAGAAAGCCT
AGAGCGTGACTTTCAACGCTGGTTACACCAGTACACTACCGCATCAGATGAAGCGTCTGATGAGCTTCGAGCTAAATACC
CCCTAAATGAAGCGAAAATTACAGTTCGAGAGAAAAGAGAAACTCCTGGACATTATTACTCAGTTATCCATTTGCGACCG
CATTTTCAACTCGATCAAATGGTATCTAGCATTAAATTAATTACCGAATTATCACCAGAGCACATGGTGTAA