Detailed information of component protein


Summary

Component ID T6CP015475
Component protein type TssC
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31210
Coordinate (Strand) 1454437..1455930 (+)
NCBI ID 491518319
RefSeq NZ_CH902589
Uniprot ID A0A2I3CRB6_VIBAX, D0X0K2_VIBAL
KEGG ID vag:N646_4405
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.1e-129 64..372
VipB_2 PF18945.2 2.7e-44 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MTTEAEKQLDPTVNEQTTSFLDQAIGATKQTEASRAEELIKTLAEEAMKGTVTWNKNLTVTFREAINLLDRQISDQLSEVMHHPELQKLEGSWRGLNYLVMNSETSSTLKVRMMSMTKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDYEFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKVLARLPYGQATAPVEEFGFEEFEVDPVSGIAVNAEHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHFFMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEATANAAISARLPYMMATSRFAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGAPGSYNAVAWLKPWLQMEELTTSLRLVAKIPQSGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9919 - -


  Protein sequence: 498 a.a.    

>T6CP015475 NZ_CH902589:1454437-1455930 [Vibrio alginolyticus 12G01] [TssC]
MTTEAEKQLDPTVNEQTTSFLDQAIGATKQTEASRAEELIKTLAEEAMKGTVTWNKNLTVTFREAINLLDRQISDQLSEV
MHHPELQKLEGSWRGLNYLVMNSETSSTLKVRMMSMTKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDY
EFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKV
LARLPYGQATAPVEEFGFEEFEVDPVSGIAVNAEHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHF
FMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEATANAAISARLPYMMATSR
FAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGAPGSYNAVAWLKPWLQME
ELTTSLRLVAKIPQSGG*

  Nucleotide sequence: 1494 bp    

>T6CP015475 NZ_CH902589:1454437-1455930 [Vibrio alginolyticus 12G01] [TssC]
ATGACGACTGAAGCTGAAAAACAGTTAGATCCAACTGTTAATGAACAGACAACTTCATTCTTAGATCAAGCTATTGGTGC
GACTAAGCAGACCGAAGCTTCTCGTGCTGAGGAGCTGATTAAAACGCTCGCTGAAGAAGCAATGAAAGGGACAGTTACTT
GGAACAAAAACCTAACAGTAACTTTTCGTGAAGCGATTAATTTGCTCGATAGGCAGATTTCTGATCAGTTGTCTGAAGTA
ATGCATCACCCAGAATTACAGAAACTCGAAGGTTCTTGGCGCGGCTTAAATTATCTAGTGATGAATTCAGAGACCAGCTC
TACTCTGAAAGTTCGCATGATGAGCATGACCAAGAAAGAGCTACATAAAGACTTGAGCAAAGCTGTTGAGTTTGATCAAA
GCCAGATCTTTAAAAAGGTTTACGAGTCTGAGTTTGGTAGTGCTGGTGGTGAACCGTATGGTGCATTGATTGGAGACTAT
GAGTTTACCAACCACCCAGAAGATATTGAGTCGTTACGCCTAATGTCAAATGTAGCGGCTTCTGGCTTCTCTCCATTCTT
GTCCGCAGCTTCACCAGCACTATTCGGCTTTGATGAGTGGACTGAGTTGTCAAAACCACGCGACCTAGATAAGGTATTTG
AATCACTAGAATACGCCCAATGGCGTTCGTTCCGCGAGAGTGCCGATTCGCGCTTCGTTAGTCTGACGATGCCAAAAGTC
CTTGCTCGTTTGCCATACGGACAAGCTACCGCTCCAGTCGAAGAGTTTGGGTTTGAAGAGTTCGAAGTAGATCCTGTTTC
AGGTATTGCTGTTAACGCTGAACATAACGACTACTGTTGGATGAACTCTTCGTATGTTCTTGGTGTTAAGTTAACCGACG
CATTTTCAAAATATGGATTTTGTACTGCCATCCGTGGTGCAGAAGGCGGCGGTCGAGTGGATAACTTGCCAACGCATTTC
TTCATGAGTGATGATGGCGACCCTGATATGAAGTGCCCAACAGAGATTGGTATTACCGACAGACGTGAGGCGGAGCTTGG
TAAGCTTGGTTTCTTACCGCTTTGTCACTACAAAAACACCAACTATGCAGTGTTCTTTGGTGCGCAAACCTGTCAAAAAC
CAGCGAACCATGAATCCCCTGAAGCAACGGCCAATGCGGCCATTTCTGCCCGCCTACCTTATATGATGGCAACATCTCGT
TTTGCGCATTATTTGAAAGTAATGGCTCGAGATAAAATTGGTAGCTTTATGGAAGCAGAAGACGTTGAGTCTTGGCTGAA
CCGCTGGATCCTAGGTTACGTCAATGCTTCTGAAGGCGGTGGTCAAGAGATCAGAGCGAAATACCCTCTAGCAGACGCTC
GTGTTCAGGTTAAGGAAATTCCTGGCGCACCTGGTTCTTACAATGCCGTAGCATGGCTGAAGCCTTGGTTACAAATGGAA
GAACTGACCACATCTTTGCGACTTGTGGCAAAGATCCCTCAGTCAGGTGGATAA