Detailed information of component protein


Summary

Component ID T6CP015473
Component protein type TssA
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (372 a.a.); Nucleotide sequence (1116 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) V12G01_RS31200
Coordinate (Strand) 1452776..1453891 (+)
NCBI ID 491518317
RefSeq NZ_CH902589
Uniprot ID UPI0000D5406C
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.5e-32 13..142

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-371 MSNEMFDWYEQALAPISQENPTGIDPREDVSPQSAYYRLKDQRMAARNAERNALIEEESIYTHSNLWRVFIEDVPEILTNQSKDLEFVAWLIEALTRLYGFRGMGVGYKLATSLIENFWDDLYPMPDEDGIETRISAIIGLNGIDSEGTLIFPIACIPLTDLGVEQAYAYWEYQQAIELERLDEDKRRNRVELGAVELSEIITTVKSTSDTFYQELITDLEFATESFNEFSQRLDEVVGDVTPSSYISKRLESIHSALKHLLGDRFNQPQAVFEELEDLDESSSEQPLSSQSCDALLATNMKSREQAIRQLQQVADFFRESEPHSPVSYSIEQIIRWCGMPLPELLAELISDGDAKKSYFRLVGIAEQNEN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9876 - -



  Protein sequence: 372 a.a.    

>T6CP015473 NZ_CH902589:1452776-1453891 [Vibrio alginolyticus 12G01] [TssA]
MSNEMFDWYEQALAPISQENPTGIDPREDVSPQSAYYRLKDQRMAARNAERNALIEEESIYTHSNLWRVFIEDVPEILTN
QSKDLEFVAWLIEALTRLYGFRGMGVGYKLATSLIENFWDDLYPMPDEDGIETRISAIIGLNGIDSEGTLIFPIACIPLT
DLGVEQAYAYWEYQQAIELERLDEDKRRNRVELGAVELSEIITTVKSTSDTFYQELITDLEFATESFNEFSQRLDEVVGD
VTPSSYISKRLESIHSALKHLLGDRFNQPQAVFEELEDLDESSSEQPLSSQSCDALLATNMKSREQAIRQLQQVADFFRE
SEPHSPVSYSIEQIIRWCGMPLPELLAELISDGDAKKSYFRLVGIAEQNEN*

  Nucleotide sequence: 1116 bp    

>T6CP015473 NZ_CH902589:1452776-1453891 [Vibrio alginolyticus 12G01] [TssA]
ATGAGTAATGAAATGTTTGATTGGTATGAACAAGCGTTGGCTCCTATATCTCAAGAAAATCCTACAGGTATTGATCCTAG
AGAGGATGTATCACCACAGTCTGCTTACTATCGGTTGAAAGATCAGCGTATGGCCGCCCGCAACGCTGAACGTAATGCTC
TTATAGAAGAAGAAAGTATCTATACCCACAGTAATTTATGGCGAGTATTTATTGAAGATGTCCCAGAAATACTCACGAAT
CAGTCTAAAGATTTGGAATTTGTTGCCTGGCTTATAGAAGCCCTAACTCGATTGTATGGTTTTCGTGGTATGGGCGTTGG
CTACAAACTCGCAACCAGTTTAATTGAGAACTTTTGGGATGATCTGTACCCAATGCCTGATGAAGATGGTATTGAGACAA
GAATATCGGCGATTATTGGCCTCAATGGTATCGATAGTGAAGGAACACTTATTTTTCCAATTGCTTGTATACCATTGACT
GACTTAGGCGTGGAGCAAGCTTATGCCTATTGGGAATATCAGCAAGCTATAGAGCTTGAGCGCTTAGACGAAGATAAGCG
CCGAAATCGAGTCGAGCTTGGGGCTGTTGAGTTATCTGAAATTATAACTACGGTTAAGTCGACTTCTGATACGTTTTATC
AAGAATTAATCACGGATTTGGAGTTCGCTACAGAATCATTTAATGAATTCAGTCAGCGATTAGACGAAGTGGTCGGTGAT
GTGACTCCTAGCTCTTATATATCAAAAAGACTTGAATCAATACACTCGGCATTAAAGCACCTTCTAGGAGATCGTTTCAA
TCAACCACAAGCCGTGTTTGAAGAGCTAGAGGATCTTGATGAATCTTCTTCTGAACAACCGTTAAGTTCACAAAGTTGTG
ATGCATTATTAGCGACAAACATGAAATCACGAGAGCAGGCAATTAGACAATTGCAGCAAGTAGCTGATTTCTTCCGAGAG
AGTGAACCTCACTCACCAGTTTCTTACTCCATCGAACAGATTATTCGTTGGTGTGGGATGCCTCTGCCGGAGTTACTGGC
GGAACTTATCTCCGACGGGGATGCAAAGAAAAGCTACTTCCGTTTGGTTGGCATAGCAGAACAAAATGAAAATTAA