Detailed information of component protein


Summary

Component ID T6CP015472
Component protein type TagG
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (265 a.a.); Nucleotide sequence (795 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31195
Coordinate (Strand) 1451989..1452783 (+)
NCBI ID 491518316
RefSeq NZ_CH902589
Uniprot ID A0A0P7DH28_VIBAL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PP2C_2 PF13672.8 5.6e-22 19..211
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-264 MNWNYFTFAKSHAGKVRPYNEDALLDMTEQHIWVVADGMGGHSAGDIASQMLVDRVARHMQDVSNTNIDDIRRVVQEANLEIYQYAQNHLDGKTMGTTLVLLFIQDGYYHCLWVGDSRIYQLRSGNFVQKTRDHSQVMDLVDQGLLAFEDAESHPLANVITRAVGVDESVTIDQVSGQLADGDQFLLCSDGLSKELTSDEIHRTLYADSVNQAGLALMHSALVRGASDNVTCALIKVRQAQTECETVTREDATIPVFLRGRAYE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9816 - -


  Protein sequence: 265 a.a.    

>T6CP015472 NZ_CH902589:1451989-1452783 [Vibrio alginolyticus 12G01] [TagG]
MNWNYFTFAKSHAGKVRPYNEDALLDMTEQHIWVVADGMGGHSAGDIASQMLVDRVARHMQDVSNTNIDDIRRVVQEANL
EIYQYAQNHLDGKTMGTTLVLLFIQDGYYHCLWVGDSRIYQLRSGNFVQKTRDHSQVMDLVDQGLLAFEDAESHPLANVI
TRAVGVDESVTIDQVSGQLADGDQFLLCSDGLSKELTSDEIHRTLYADSVNQAGLALMHSALVRGASDNVTCALIKVRQA
QTECETVTREDATIPVFLRGRAYE*

  Nucleotide sequence: 795 bp    

>T6CP015472 NZ_CH902589:1451989-1452783 [Vibrio alginolyticus 12G01] [TagG]
ATGAATTGGAACTATTTTACCTTTGCTAAATCGCACGCAGGAAAAGTACGCCCTTATAACGAGGATGCTCTGTTGGATAT
GACAGAACAGCATATTTGGGTGGTTGCCGATGGAATGGGTGGACACAGTGCTGGCGATATAGCAAGCCAGATGCTAGTGG
ATAGAGTCGCGCGCCACATGCAGGATGTCTCCAATACTAATATCGATGATATCCGAAGAGTGGTTCAAGAAGCGAACTTA
GAAATTTACCAATACGCACAAAATCACTTAGACGGTAAAACGATGGGAACAACACTTGTTTTGTTGTTTATTCAGGATGG
GTATTACCACTGTCTTTGGGTGGGTGATAGCCGAATTTACCAGCTTAGAAGTGGTAATTTTGTCCAAAAAACACGTGATC
ATAGTCAAGTCATGGACTTAGTGGATCAGGGCTTATTGGCATTTGAAGATGCCGAATCGCACCCTCTTGCAAATGTTATT
ACCAGAGCTGTTGGGGTCGACGAAAGTGTCACTATTGATCAAGTTTCAGGGCAGTTGGCTGACGGCGATCAGTTTCTACT
CTGTAGCGATGGACTCTCTAAGGAACTTACGAGTGATGAAATTCATCGGACATTGTATGCAGACTCAGTCAACCAAGCTG
GATTAGCGCTCATGCATTCGGCTTTGGTTCGGGGCGCAAGTGATAACGTAACTTGTGCTTTGATCAAAGTTCGCCAAGCG
CAAACGGAGTGCGAAACAGTAACTAGAGAAGACGCGACGATACCTGTCTTTCTAAGAGGGAGAGCTTATGAGTAA