Detailed information of component protein


Summary

Component ID T6CP015470
Component protein type TssM
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (1173 a.a.); Nucleotide sequence (3519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 1447784..1451302 (+)
NCBI ID 491518311
RefSeq NZ_CH902589
Uniprot ID UPI0000D54039
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MRIKEIGRIFTQ
Transmembrane helix 13-32 RWFLGLIGVAACSIFIWVVG
Outside 33-46 PLIAIAGYEPLKSD
Transmembrane helix 47-64 FQRLVTILVLVLLWAIFN
Inside 65-445 VTKQHKQKVKEDESIQTLLEVDSLSDKEAASEIDLMRERIEQAVKVVTKTHKGKRSLYDLPWYVLIGPPGTGKTTVLKQSGLEFPLGDSLGSDSIAGVGGTRHCDWWFANKAVLIDTAGRYTTQDSQEKVDSKAWHGFLGLLKKYRTQRPINGAIVTISLASVMSQTRTERSLHARAIKSRLQELKNQLGMQFPIYVLLTKMDLVAGFNEFFADLSKEEREELFGFMFPREVDDERGVISLFNKEFHGMLERLDARMLRILETEDDLDKRALIFEFPKQLRVLQANLDEFLAEIFAQNSFEEPALIRGVFMLSSVQEGLPVDKLMNESTNGLGLNRLALAKSQTGSHSYFVKNLFDKVIFKEQLLGTVNRHYQKQSGWMRR
Transmembrane helix 446-463 GVYIGCTTLLLGASALWF
Outside 464-1172 MSYKWNSQLIVDTNEQVSHIDAMIGAQSLDFEADIVSAVETLDRLMTLPLGKQSDYGDADSVKRFGLYQGDKVSQAANNAYSDALTQYYAPLLLDSLVSEMESNQQHREYLYETLKTYLMLFNPDKYQQDEVLAWFNFYFERQYPGELNADLRRRLLQHTQYLLGNDGQGFTYNTAAVTSAREVLTQMSLPERAYQRMKIQFSKSHVPSFRLTDVLGPKGLEQFERASGKPLSQGISGFYTYNGFHSIFQIQINRTVKSLMEENWVYGDDLKAHEIDQDSAIQGVQSRYYQDYVNEWKTLIEDIQLKQAPSLELATEQARVLSGVERPIESLLRAIQKEVALSKVSLSENQKAASEVAGKVAKVKFSNTADRLDMYLPEENGFNVALPGKEVESHFSEILRLGEQDFDDIQQAMVNLRSYLSDLSSSGNNQKIAYKSILDGTVTQDVAASFARAKELLPRPFNQWLGELSQESVKFAESGSKDHLNQLWVTQVVRPYQRTIAGRYPFEPNASREVRLKDFKRFFGYGGTLDAFFQEYLEPFVDTSKSRWRLEKEIGVRPETLMVFQRAQRIRQSFFESDNSLRVEFGMKPVYLDQHITRFVLELGGQDLVYKHGPARAKSLSWPAGQDQTRIVFTPPESKREIAHTYEGEWGIFKLLDQSLKARPESRKDNIVMIDLKGNKVQLELIPSSAINPFWSNEMERFRCPRTL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5822 - -


  Protein sequence: 1173 a.a.    


  Nucleotide sequence: 3519 bp