Detailed information of component protein


Summary

Component ID T6CP015468
Component protein type TssK
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31175
Coordinate (Strand) 1445138..1446463 (+)
NCBI ID 1168680938
RefSeq NZ_CH902589
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.3e-123 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MTQYSKTAWCEGMFLRPQHFQQQERATSQEFKGLHQLGGAYNWGVWKCRVKKHALKDGLIELEHLEAVLPDMTLVNTLISNDSVSPLLIDKNTENTLVKITLPLSSVTGKNVSDVSESIVSRYVLQDIDVIDNLTGQDEETIQVAALNLELKASNDKLAGYVELPILRIKEVTPEGEVILDDEYVPPLINLLSDKVMSAYLRNVIAMTKMRADVIAQRLIKGKSASASAVDFIMLQMLNRYEAKLKHFSELDRLHPLELATTLKGYIGELATFSNKTKRVPSLLAYDHLDVSSVYSELNQILSQYLSVVLDQTATKLPLEPRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKFGPAEQIRDLINNQINGINVVPLSVVPRQIPYQTGYVYFEVVKKGPFWMRLKDSGGIALHLSGHFPNAELELWSINQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9931 - -


  Protein sequence: 442 a.a.    

>T6CP015468 NZ_CH902589:1445138-1446463 [Vibrio alginolyticus 12G01] [TssK]
MTQYSKTAWCEGMFLRPQHFQQQERATSQEFKGLHQLGGAYNWGVWKCRVKKHALKDGLIELEHLEAVLPDMTLVNTLIS
NDSVSPLLIDKNTENTLVKITLPLSSVTGKNVSDVSESIVSRYVLQDIDVIDNLTGQDEETIQVAALNLELKASNDKLAG
YVELPILRIKEVTPEGEVILDDEYVPPLINLLSDKVMSAYLRNVIAMTKMRADVIAQRLIKGKSASASAVDFIMLQMLNR
YEAKLKHFSELDRLHPLELATTLKGYIGELATFSNKTKRVPSLLAYDHLDVSSVYSELNQILSQYLSVVLDQTATKLPLE
PRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKFGPAEQIRDLINNQINGINVVPLSVVPRQIPYQTGY
VYFEVVKKGPFWMRLKDSGGIALHLSGHFPNAELELWSINQ*

  Nucleotide sequence: 1326 bp    

>T6CP015468 NZ_CH902589:1445138-1446463 [Vibrio alginolyticus 12G01] [TssK]
ATGACGCAATACTCCAAGACGGCTTGGTGCGAAGGAATGTTTTTACGTCCCCAGCACTTCCAACAACAAGAACGCGCAAC
CTCTCAAGAATTCAAGGGCTTACATCAGTTAGGTGGGGCTTACAATTGGGGAGTTTGGAAATGTCGAGTAAAAAAACACG
CGCTAAAAGATGGTCTTATTGAACTTGAGCATCTTGAAGCTGTTTTGCCAGATATGACGTTGGTTAATACGTTAATATCC
AACGATTCAGTTTCGCCTCTACTTATTGATAAAAACACTGAAAATACGTTAGTAAAAATAACTCTCCCTCTTTCAAGTGT
TACAGGTAAAAACGTTTCGGATGTAAGCGAATCGATCGTCTCTCGTTATGTACTTCAAGATATCGACGTGATAGATAACC
TTACAGGACAAGATGAAGAAACCATCCAAGTTGCAGCCCTTAACCTAGAGTTGAAAGCGAGTAATGACAAATTAGCGGGT
TATGTGGAGTTACCTATCTTAAGGATCAAAGAGGTAACTCCTGAAGGGGAAGTTATACTAGACGATGAGTACGTTCCTCC
GCTTATCAACCTCCTTAGCGACAAAGTTATGTCAGCTTATCTACGTAACGTTATCGCGATGACAAAGATGCGTGCTGACG
TTATTGCACAGCGCTTGATTAAGGGTAAATCTGCATCGGCATCTGCTGTTGATTTCATCATGCTCCAAATGCTGAACCGA
TATGAGGCGAAGTTAAAGCATTTCAGTGAGTTAGATAGGTTACATCCACTGGAATTAGCGACGACACTTAAAGGTTACAT
TGGTGAGTTAGCCACTTTTTCTAATAAAACTAAAAGAGTCCCAAGTTTGCTTGCGTATGATCACTTAGATGTATCAAGTG
TCTATAGCGAGTTGAATCAGATACTCAGTCAGTACCTCAGTGTTGTCCTTGACCAAACTGCGACCAAACTTCCGTTGGAG
CCTCGCCAATACGGTATTCAAGTGACGCCGCTTCCAGATAAACGCTTGCTTGAGTCATGCCAATTTGTGCTAGCAATTAA
AGCAGACACCACAACAGATGAAATAAGACGCCTGGTCCCAGCGCAACTCAAGTTTGGCCCGGCAGAACAGATTCGCGATC
TAATTAATAATCAGATCAACGGTATAAACGTAGTGCCGTTGAGTGTCGTCCCGAGACAGATTCCTTACCAAACGGGCTAT
GTTTATTTCGAAGTTGTCAAGAAAGGGCCATTTTGGATGAGGCTAAAAGATAGTGGCGGTATTGCGCTTCACCTATCAGG
GCATTTTCCGAATGCTGAACTTGAGCTTTGGAGTATTAATCAATAG