Detailed information of component protein


Summary

Component ID T6CP015466
Component protein type TagH
T6SS ID (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (398 a.a.); Nucleotide sequence (1194 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) V12G01_RS31165
Coordinate (Strand) 1443456..1444649 (+)
NCBI ID 491518300
RefSeq NZ_CH902589
Uniprot ID UPI0000D53FEB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 4.8e-14 32..101
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-397 MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVVSGTHGELIKFGDKYLIKDLSTNGTFVNNAVTPVGQGNEIALSDDDMVSLGDYQISVSIQTDTDVFSLETSKSLSSAPPEVVSSPSEAEFVDLGLSASELLNESVPSDFQLDIGLVDDFIDIPKPEKQSTVSETLPKVNRQSEHLSTPNFDTNGGELAAFVRGVGIDPMMIPSDNREEWFEQLGESFSLMLVGLMETLHNRAVFKQTNRLSHTAFRKSENNPLKFSANLEDAIHNLYNRQTASFLKPNAAIKEAFNDIESHEQALMKGVEGTVSSVMSLVEPTSIYSDALAKDTVINKVIPARKYAQSWKRFEDIHEKLSDDIINKESPFYLEDFAKHYELALKNKG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9668 - -


  Protein sequence: 398 a.a.    

>T6CP015466 NZ_CH902589:1443456-1444649 [Vibrio alginolyticus 12G01] [TagH]
MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVVSGTHGELIKFGDKYLIKDLSTNGTFVNNA
VTPVGQGNEIALSDDDMVSLGDYQISVSIQTDTDVFSLETSKSLSSAPPEVVSSPSEAEFVDLGLSASELLNESVPSDFQ
LDIGLVDDFIDIPKPEKQSTVSETLPKVNRQSEHLSTPNFDTNGGELAAFVRGVGIDPMMIPSDNREEWFEQLGESFSLM
LVGLMETLHNRAVFKQTNRLSHTAFRKSENNPLKFSANLEDAIHNLYNRQTASFLKPNAAIKEAFNDIESHEQALMKGVE
GTVSSVMSLVEPTSIYSDALAKDTVINKVIPARKYAQSWKRFEDIHEKLSDDIINKESPFYLEDFAKHYELALKNKG*

  Nucleotide sequence: 1194 bp    

>T6CP015466 NZ_CH902589:1443456-1444649 [Vibrio alginolyticus 12G01] [TagH]
ATGAAGTTGGTTTTAACCATAACAAGTTTTCACAAATTTACTCCAGAGATTGAGAGTGAGTTCGTGTTTGAATCAAGTGA
TGAACATGCCAAGGTTACATTTGGTAGGTCTGAACAATGTGATTGGACACTACCAGATCCTGAAAGAGTGGTATCCGGAA
CCCACGGAGAACTGATTAAGTTTGGTGACAAATACTTGATAAAAGACCTCTCAACTAATGGTACTTTTGTAAATAATGCT
GTAACTCCTGTGGGTCAAGGAAATGAAATAGCACTAAGCGATGACGATATGGTTAGCTTAGGGGATTATCAAATTTCAGT
TTCTATTCAAACAGATACAGATGTATTCAGTCTTGAGACAAGTAAAAGTCTTTCTAGCGCACCCCCTGAAGTAGTCTCAA
GTCCATCGGAAGCAGAATTTGTTGACCTAGGCCTTAGTGCTAGTGAACTCTTAAACGAAAGTGTTCCTTCTGACTTTCAG
CTAGATATTGGTTTAGTCGATGATTTTATTGATATCCCAAAGCCCGAAAAACAGAGCACCGTATCTGAAACTTTACCGAA
AGTTAACCGACAATCAGAACACCTATCGACTCCCAACTTTGATACCAATGGGGGTGAACTTGCGGCTTTTGTTAGAGGGG
TGGGTATAGATCCAATGATGATTCCCAGCGATAACCGAGAGGAATGGTTCGAACAACTGGGGGAGTCATTTTCTTTGATG
CTAGTTGGTTTAATGGAAACACTGCATAACAGAGCAGTGTTTAAACAAACAAATCGACTTAGTCATACCGCATTTCGTAA
GTCAGAAAATAACCCTTTAAAGTTTTCTGCAAACTTAGAAGATGCGATTCATAACTTATATAACCGTCAAACCGCTAGCT
TCTTAAAGCCAAATGCAGCCATTAAAGAAGCATTTAATGACATCGAAAGTCATGAGCAAGCCTTAATGAAAGGTGTTGAA
GGTACGGTTTCGAGTGTTATGTCACTTGTTGAACCTACTTCTATATACTCAGATGCTTTAGCGAAAGACACGGTTATTAA
TAAGGTTATTCCAGCTAGGAAATATGCTCAAAGTTGGAAGAGGTTTGAGGATATTCATGAAAAGCTATCCGATGATATTA
TCAATAAAGAGTCTCCGTTCTATTTAGAAGACTTCGCTAAGCACTATGAATTAGCATTAAAAAACAAAGGCTAG