Detailed information of component protein


Summary

Component ID T6CP015438
Component protein type TagH
T6SS ID (Type) T6SS01220 experimental (Type i1)
Strain Campylobacter jejuni strain WP2202
Replicon plasmid pCJDM202
Sequence Protein sequence (300 a.a.); Nucleotide sequence (900 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) A0W69_09040
Coordinate (Strand) 29472..30371 (+)
NCBI ID 1004801965
GenBank CP014743
Uniprot ID A0A1J6QPK2_CAMJU
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-299 MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQDKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNLEFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENNDYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQSSKLNKDYSSISIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNIKEDKILFENLTIKALEKYIKDFE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9835 - -



  Protein sequence: 300 a.a.    

>T6CP015438 CP014743:29472-30371 [Campylobacter jejuni] [TagH]
MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQDKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSF
SRMPSGYEIIISIGDIFKIGNLEFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQSSKLNKDYSSISIKDFESIINNIPLIKSTRLIN
ILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNIKEDKILFENLTIKALEKYIKDFE*

  Nucleotide sequence: 900 bp    

>T6CP015438 CP014743:29472-30371 [Campylobacter jejuni] [TagH]
ATGATAGAAAAAGAAGAAATAGGAATTGCTATTGAGAATTATGACGAATGTATTAGTGGTTCTAAAACATTTGTATTTAA
CACAAAGGGTGGAACTATAGGAAGCGGTGATGATTGCACTTTTCGTATTCAAGATAAACTAGAACAAATCAAAAACACCC
ATGCCATAGTATCTTATGAAGAAGGATCTTTTACAATTGCGGCTTTTGAAGATTCTGACATTTATTATAATAAGTCCTTT
TCTAGAATGCCAAGTGGCTATGAAATAATAATCAGCATAGGCGATATTTTTAAAATCGGTAATTTAGAATTTAGATTTGT
GGATGCAAAAAGCATTGAAGCAAGCATTAAAGAAAATAAAAAATACTTAGAAGATATTGAAAAACGCAATCATTTTGATG
AAATTGAAATTAAACCTAGAGGAAAAACAAGTATAAATTTTGACAAAAACAAAGAGTTAAAAGAGATTTTAGAAAATAAT
GATTATAAATTTATCGAAGAAGAAAAGGCAGATGATAGCTTTTTAAAAGAAATAATTCAAAAAAATCCAAATTCATTAGA
ATATGAAAATGTTTTAAAAAGTTTGGTAAAAAATTTAAAAGATATTAAAACAAAACAACAAAGCTCTAAATTAAATAAAG
ATTATTCTTCTATTAGTATCAAAGATTTTGAAAGTATTATTAATAATATACCCTTAATCAAATCCACAAGATTGATCAAT
ATTTTAGCCCTTAGCCTAATCGCAAAAGAATTATATACTCCAATATTTGAAGAAATGGAAGAAAATATGTTTATTAAATA
TATTGAAGCTGCCATACAAAACAATATCAAAGAAGATAAGATTCTTTTTGAAAATCTTACCATCAAAGCATTGGAAAAGT
ATATTAAAGATTTTGAGTGA