SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015436
Component protein type	TssD
T6SS ID (Type)	T6SS01220 (Type i1)
Strain	Campylobacter jejuni strain WP2202
Replicon	plasmid pCJDM202
Sequence	Protein sequence (172 a.a.); Nucleotide sequence (516 bp)
Reference	[1] Marasini D, Karki AB, Bryant JM, et al. Molecular characterization of megaplasmids encoding the type VI secretion system in Campylobacter jejuni isolated from chicken livers and gizzards. Sci Rep. 2020 Jul 27;10(1):12514. doi: 10.1038/s41598-020-69155-z. PMID: 32719325

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	A0W69_09030
Coordinate (Strand)	25315..25830 (-)
NCBI ID	1004801963
GenBank	CP014743
Uniprot ID	R9TLR6_CAMJU
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	2.6e-30	6..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-171	MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEVSHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTATSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGTSGSDDWREGKA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9544	-	-

Protein sequence: 172 a.a.

						>T6CP015436 CP014743:c25830-25315 [Campylobacter jejuni] [TssD]
MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEVSHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPL
LYNALTKGERLPTVEVHWFRTATSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
SGSDDWREGKA*					

Nucleotide sequence: 516 bp

						>T6CP015436 CP014743:c25830-25315 [Campylobacter jejuni] [TssD]
ATGGCTGAACCAGCGTTTATAAAAATTGAAGGTTCCACGCAAGGTTTGATTTCAAGCGGTGCATCTACTGAAGCGAGTAT
TGGCAATAGATATAAATCGGGTCATGAAGATGAAATCATGGCTCAAGAGGTATCTCATATTGTAACCGTACCTGTTGATC
AGCAAAGCGGACAACCTTCTGGACAAAGAGTTCATAAGCCTTTTTCTTTTACTTGTTCATTAAATAAATCTGTGCCTTTG
CTATATAATGCACTTACCAAAGGAGAAAGACTTCCAACAGTCGAAGTTCATTGGTTTAGAACCGCAACAAGTGGCGGATC
TGAACATTTTTTTACTACAAAATTGGAAGATGCAATTATTACAAATATTGAATTAATAATGCCAAATGCGCAAGAGTCAA
GTAATCATGATAAAACCGAGCTTTTAAAAGTTTCAATGAGCTATAGAAAAGTAGTTTGGGAACATACTGCTGCTGGAACT
AGCGGAAGTGATGATTGGAGAGAGGGCAAAGCTTAA					