Detailed information of component protein


Summary

Component ID T6CP015432
Component protein type TssA
T6SS ID (Type) T6SS01220 experimental (Type i1)
Strain Campylobacter jejuni strain WP2202
Replicon plasmid pCJDM202
Sequence Protein sequence (412 a.a.); Nucleotide sequence (1236 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) A0W69_09010
Coordinate (Strand) 21076..22311 (-)
NCBI ID 1004801959
GenBank CP014743
Uniprot ID UPI000779D28B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.2e-11 172..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-411 MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYSQFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLLFQHLKKLIDENNAYILAQKRKIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPVTQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEKITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKKTDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVELMEKTLLKDYLAEEYENAKSKIK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9895 - -


  Protein sequence: 412 a.a.    

>T6CP015432 CP014743:c22311-21076 [Campylobacter jejuni] [TssA]
MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYSQFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLL
FQHLKKLIDENNAYILAQKRKIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPVTQVS
VNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEKITKIRKPDADIIRILLSDKEN
DIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKE
NKKSFFSSKKTDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVELMEKTLLKDYLA
EEYENAKSKIK*

  Nucleotide sequence: 1236 bp    

>T6CP015432 CP014743:c22311-21076 [Campylobacter jejuni] [TssA]
ATGTATTTTTGTGATCAATTGAAAAATAATTTAGATGAACTACAAGAATTTCAGTTACTTGAAGATGAGATGTCAAAATA
TAAGACTTTAAACCATGAAAATATTTCTTGGGATAAAGTTTATCAATATTCTCAGTTTATATTATTAAATCATTCTTTAG
ATTTTAAAATTTGCAACTATTTTCTTTTATCGTGTTTTAATTTAAACAATGAAGAATGCTTTGAAAAGCTTTTGCTTCTT
TTTCAACATTTAAAAAAACTTATAGATGAAAATAATGCTTATATATTAGCTCAAAAGCGAAAAATTCAAAATTTTATTCA
AGAATACAATAAAACAAAAGTGCTTATATCATCTGAGATTGTTAATCAATTTATTACTTTATTTTCCGAATTTGAAAATT
TACTATCTTGCAATTTTGCAAAAATTGAAATTGCTCAAGTTGCACCACAACTTCCAAAATCTCCTGTAACTCAAGTATCT
GTAAACATTAGAAGCGATAATATTAACTCTTTAAACGAGAGAGAATATAAAAATTTTTATCAAAAACTTGCATTTGAGCT
TTTGGAAGAGGATGAAAATAATCTCAATATCTACGCTTTATTCACCCAAGCAATGTGGGGAAAAATCAGGTGTTTGCCTG
AATGTAATAATGAAAAAATTACTAAAATAAGAAAACCTGATGCAGATATAATTCGCATATTACTTTCTGATAAAGAAAAT
GATATAGAACATATTAAATGTTTTATGCATGAACTTATTTTAAATCCTTTTTGGATAGAGGGTGTACAACTCTTTTGTGA
TTTTTTAGAAAAAAAGAAAAAAAATAAACAATTAGACATTCTTATAATATTAACAAGTGATTTTATTTCTAAATTTGATA
CTATTGAACTTCTCCGTTTTCAAAATGGTGATTTTATCTGCAAAGAAGAAGTTTATAAATATTTTGTTAAATCCAAAGAA
AATAAAAAAAGTTTTTTTTCAAGTAAAAAAACTGACAAAGAACATACATTACAAGATTTTGAGCAAATGCTGATGAATAT
TGATAAAGAAAATTTTAATAATTCTATTATGAATAATATTAATTCCTTGCTAGATATGGTAAAAATTTTTGAATCAAAAG
GAATGAAAAAGAACTCTAAAATTTTAAATATATACTTAGTAGAGTTAATGGAGAAAACTCTACTAAAAGATTATCTAGCC
GAAGAATACGAAAACGCAAAAAGTAAAATTAAGTGA