Detailed information of component protein
Summary
| Component ID | T6CP015429 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01220  (Type i1) |
| Strain | Campylobacter jejuni strain WP2202 |
| Replicon | plasmid pCJDM202 |
| Sequence | Protein sequence (131 a.a.); Nucleotide sequence (393 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | A0W69_08995 |
| Coordinate (Strand) | 18671..19063 (-) |
| NCBI ID | 1004801956 |
| GenBank | CP014743 |
| Uniprot ID | A0A1E7P7Z3_CAMJU |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1e-08 | 26..106 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-130 | MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNVKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9970 | - | - |
Protein sequence: 131 a.a.
>T6CP015429 CP014743:c19063-18671 [Campylobacter jejuni] [TssE]
MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNVKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYE
KRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK*
MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNVKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYE
KRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK*
Nucleotide sequence: 393 bp
>T6CP015429 CP014743:c19063-18671 [Campylobacter jejuni] [TssE]
ATGTCCTTGCTAGATAAACTGATCCATAATTTAGATGAGCAAAACATTCATATTCCATTCTATCAAAATGATTTTGAGGA
TGTAAAAAACAATATAAAGGTTTTGCTCAATGTAAAAATTAATGATTGTTATGCTGTAAAAAATTTGGGAATGCCTAATA
TGGCTGATATTAATCTTAACTCTAATGAATTATGCGTATCAATGGCTAAGGAAATAAGAAAACTAATTGATAACTATGAA
AAAAGAATATGTGTAGTTTCTATCACTTATGATAACAATTTAAGTCCTTGGCAACTTTCTTTTATTGTAAAATGTTTTTT
TCAGGATGATCGTTTTAAAGAATTTAATATAGAAATCATCTTTAAAAACAATAGATATTGCGAGGTTAAATGA
ATGTCCTTGCTAGATAAACTGATCCATAATTTAGATGAGCAAAACATTCATATTCCATTCTATCAAAATGATTTTGAGGA
TGTAAAAAACAATATAAAGGTTTTGCTCAATGTAAAAATTAATGATTGTTATGCTGTAAAAAATTTGGGAATGCCTAATA
TGGCTGATATTAATCTTAACTCTAATGAATTATGCGTATCAATGGCTAAGGAAATAAGAAAACTAATTGATAACTATGAA
AAAAGAATATGTGTAGTTTCTATCACTTATGATAACAATTTAAGTCCTTGGCAACTTTCTTTTATTGTAAAATGTTTTTT
TCAGGATGATCGTTTTAAAGAATTTAATATAGAAATCATCTTTAAAAACAATAGATATTGCGAGGTTAAATGA