Detailed information of component protein


Summary

Component ID T6CP015427
Component protein type TssG
T6SS ID (Type) T6SS01220 experimental (Type i1)
Strain Campylobacter jejuni strain WP2202
Replicon plasmid pCJDM202
Sequence Protein sequence (303 a.a.); Nucleotide sequence (909 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) A0W69_08985
Coordinate (Strand) 16048..16956 (-)
NCBI ID 1004801954
GenBank CP014743
Uniprot ID A0A1E7P7Y1_CAMJU
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.1e-46 6..287

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-302 MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKIIFSEHEQSIIELFINFMGLHGVSSQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYMKLCE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -



  Protein sequence: 303 a.a.    

>T6CP015427 CP014743:c16956-16048 [Campylobacter jejuni] [TssG]
MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKIIFSEHEQSIIELFINFMGLHGVSSQLPSFMLDKLSRN
EDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIE
RVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHD
DLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYMKLCE*

  Nucleotide sequence: 909 bp    

>T6CP015427 CP014743:c16956-16048 [Campylobacter jejuni] [TssG]
ATGAATAATCTTACTTCATATAGTTTTTTTAAATTAATAAAAAAATTAGAAAAAGACTATGGAAGAAAGAATATATTTTT
AAGAACAAATAAAAGTTTAAAACATCCAAATAAAGATATAGAAAAAATCATTTTTTCAGAACACGAACAATCAATTATAG
AATTGTTTATAAATTTCATGGGGCTACATGGAGTCTCTTCACAACTTCCTTCATTTATGCTAGATAAACTGTCAAGAAAT
GAAGATGGCGATCAAGGTTGGACTCTATTCTTTGATTTCTTTAATCATTATTTGCTTTGGATATTTTTTGATGTAATAAG
CTTAAAAAATTATCCACGATCTTTTAATGAAAATTTTAAAGATTCTATTTCAAAAATTTTATTTAGCATGTTGGGAATTA
AAGAATACGATATTGCAAAAAAATATTTACCATTTGCACCTTTACTACTAAGTTTAAGACGACCTAAAACACACATTGAA
AGAGTTTTACAAGTCAATTTTAAACTTAAGGATAAATTATCAATTATTGAAAATTTACCCCATCAAATTTTAATTTCAAA
TTCGCAAAAAAATAACTTAGGAATAAAGAACAATATTTTAGGAAATAATTTCATATTAGGCGATAAATTTATCTCTTATC
AAAACAAAATAGCGATCTATATAAAGGATATTTCATATCAAGAAGCGGTTAAATTTATGCCCAATGGAACCAAACACGAT
GATTTAAAAAATAGTATAATGTTTTTAACAAATAATGAATTTTGTGTTGATTTATATCTTAAAATCAACTATTCTTCAGA
AATGAAGTTTGTGTTAGGAGAAGAAAATACTGCCAAACTTGGTTGGGCAAAAATTTTAGGTAATACGCAAAAAAAATATA
CAATAGTATATATGAAACTATGTGAATAA