Detailed information of component protein


Summary

Component ID T6CP015421
Component protein type TssE
T6SS ID (Type) T6SS01219 experimental (Type i4a)
Strain Pseudomonas syringae pv. actinidiae str. Shaanxi_M228
Replicon chromosome
Sequence Protein sequence (150 a.a.); Nucleotide sequence (450 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CN228_RS17595
Coordinate (Strand) 3626672..3627121 (+)
NCBI ID WP_003382819.1
RefSeq NZ_CP032631
Uniprot ID A0A0K8LVH5_PSESF, A0A0N8TL14_PSESX, A0A261WDJ5_9PSED
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.1e-19 31..124

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-149 MSGTGIRPLLFERLAFSEDESQRPTFLDREALADSVRSELMRLLNTRRAAANMTLPPTLLDYGIADWSSLQASNSDDRRRMTREIRAAITQFEPRLQLSDVDVQSVQGHPQRLSIRLDGILRNDRQQWPVAFILHTSEAGMEVSHERFD



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9763 - -



  Protein sequence: 150 a.a.    

>T6CP015421 NZ_CP032631:3626672-3627121 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssE]
MSGTGIRPLLFERLAFSEDESQRPTFLDREALADSVRSELMRLLNTRRAAANMTLPPTLLDYGIADWSSLQASNSDDRRR
MTREIRAAITQFEPRLQLSDVDVQSVQGHPQRLSIRLDGILRNDRQQWPVAFILHTSEAGMEVSHERFD*

  Nucleotide sequence: 450 bp    

>T6CP015421 NZ_CP032631:3626672-3627121 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssE]
ATGTCCGGCACAGGGATCCGCCCGCTGTTGTTCGAGCGCCTGGCGTTCAGCGAGGACGAGTCGCAGCGCCCGACGTTTCT
CGACCGGGAGGCGCTGGCCGACTCAGTGCGCAGCGAACTGATGCGCCTGCTCAATACCCGGCGGGCGGCGGCCAACATGA
CGTTACCCCCGACCCTGCTGGATTACGGAATCGCCGACTGGAGCAGCTTGCAGGCCAGCAACAGTGACGATCGGCGGCGC
ATGACACGTGAAATACGCGCCGCCATCACTCAGTTCGAGCCACGCCTGCAACTGTCCGATGTCGATGTTCAGTCGGTGCA
GGGGCATCCGCAGCGATTGAGCATCCGCCTCGACGGAATCCTGCGCAACGACCGCCAGCAATGGCCCGTGGCATTTATCC
TGCACACATCCGAAGCAGGCATGGAGGTGAGCCATGAGCGATTCGATTGA