Detailed information of component protein


Summary

Component ID T6CP015419
Component protein type TssC
T6SS ID (Type) T6SS01219 experimental (Type i4a)
Strain Pseudomonas syringae pv. actinidiae str. Shaanxi_M228
Replicon chromosome
Sequence Protein sequence (496 a.a.); Nucleotide sequence (1488 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CN228_RS17585
Coordinate (Strand) 3624595..3626082 (+)
NCBI ID WP_003382817.1
RefSeq NZ_CP032631
Uniprot ID A0A2V0QKF5_PSESF
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.4e-136 69..369
VipB_2 PF18945.2 1.7e-46 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-495 MAKSPSAESQGSEGNTQTLTLLDKIIAEGRMAHDDSQQGYARDMLAEFATQVLDEGMAIDKDTVAMINERIGKIDSLISDQLNEILHHEDVQKLEASWRGLHALVKNTETGTRLKLRLLNVSQKELQTDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSVLVGDFTFGRHPQDIGLLEKLSSVAAAAHAPFIAAASPRLFDMSSFTELSVPRDLAKVFESQELIKWRSFRESEDSRYVSLVLPHYLLRLPYGPDTNPVEGMNFVENTTGTDHSKYLWGNAAWALTQRITEAYAKYGWCAAIRGAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQSTNKPRLYNTNEANANARISAMLPYVLAASRFAHYLKVIMRDKIGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVPGKPGAYRATVFLRPHFQLEELTASIRLVATLPPPVAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9806 - -


  Protein sequence: 496 a.a.    

>T6CP015419 NZ_CP032631:3624595-3626082 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssC]
MAKSPSAESQGSEGNTQTLTLLDKIIAEGRMAHDDSQQGYARDMLAEFATQVLDEGMAIDKDTVAMINERIGKIDSLISD
QLNEILHHEDVQKLEASWRGLHALVKNTETGTRLKLRLLNVSQKELQTDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSV
LVGDFTFGRHPQDIGLLEKLSSVAAAAHAPFIAAASPRLFDMSSFTELSVPRDLAKVFESQELIKWRSFRESEDSRYVSL
VLPHYLLRLPYGPDTNPVEGMNFVENTTGTDHSKYLWGNAAWALTQRITEAYAKYGWCAAIRGAEGGGAVEGLPAHTFRT
SSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQSTNKPRLYNTNEANANARISAMLPYVLAASRFAH
YLKVIMRDKIGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVPGKPGAYRATVFLRPHFQLEELT
ASIRLVATLPPPVAA*

  Nucleotide sequence: 1488 bp    

>T6CP015419 NZ_CP032631:3624595-3626082 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssC]
ATGGCCAAGTCACCCAGCGCTGAGAGTCAAGGCAGCGAAGGCAATACCCAGACCCTGACGTTACTGGACAAGATCATCGC
CGAAGGACGCATGGCGCATGACGACAGCCAGCAGGGTTACGCTCGAGACATGCTCGCAGAGTTCGCCACCCAGGTGCTCG
ACGAGGGCATGGCAATCGATAAAGACACGGTCGCCATGATCAACGAGCGCATCGGCAAGATCGACTCGTTGATCAGCGAC
CAGCTCAATGAAATCCTGCACCACGAAGACGTGCAGAAGCTGGAAGCTTCATGGCGCGGCCTGCATGCGCTGGTCAAGAA
CACCGAGACCGGCACCCGCCTGAAACTGCGCCTGCTCAATGTGTCGCAGAAAGAGTTGCAAACCGACCTGGAAAAAGCCG
TCGAGTTTGACCAGAGCGCGCTGTTCAAGAAGATCTACGAAGAAGAGTACGGCACCTTCGGCGGCCACCCGTTCAGCGTA
CTGGTCGGCGATTTCACGTTCGGCCGTCACCCGCAGGACATCGGCCTGCTGGAAAAACTCTCAAGCGTTGCCGCCGCCGC
TCATGCACCGTTCATTGCTGCAGCCAGCCCGCGCCTGTTCGACATGAGCAGCTTTACCGAGCTTTCGGTTCCCAGAGACC
TGGCCAAGGTGTTTGAAAGCCAGGAATTGATCAAGTGGCGCTCGTTCCGCGAAAGCGAAGATTCTCGCTACGTGTCGCTG
GTGCTGCCGCACTATCTGTTGCGCCTGCCCTACGGCCCGGACACCAATCCGGTCGAAGGCATGAACTTCGTCGAGAACAC
CACCGGTACCGACCATAGCAAATACCTGTGGGGCAATGCCGCCTGGGCACTGACCCAGCGCATCACCGAGGCCTATGCCA
AATACGGCTGGTGCGCGGCCATTCGTGGCGCAGAAGGCGGTGGCGCGGTCGAAGGTTTGCCTGCCCACACCTTCCGCACC
AGTTCGGGCGATCTGTCTCTCAAATGCCCGACCGAAGTGGCCATTACCGACCGCCGCGAAAAAGAACTCAACGACCTGGG
TTTCATCTCGCTGTGCCACAAAAAGAACAGCGACGTTGCGGTGTTCTTCGGCGGGCAGTCCACCAACAAGCCACGGCTGT
ACAACACCAACGAAGCCAATGCGAACGCGCGCATCTCGGCGATGCTGCCCTACGTATTGGCGGCGTCGCGCTTTGCCCAC
TACCTGAAAGTGATCATGCGCGACAAGATCGGCAGCTTCATGACACGCGACAACGTCCAGACCTACCTCAACAACTGGAT
CGCCGACTACGTGCTGATCAACGACAACGCGCCCCAGGAAATCAAGGCGCAGTACCCGTTGCGCGAAGCACGCGTGGATG
TCACCGAAGTGCCCGGCAAGCCGGGCGCATATCGGGCGACGGTGTTCCTGCGTCCGCACTTCCAGCTTGAAGAGCTGACC
GCGTCGATTCGTCTGGTCGCCACCCTGCCCCCTCCGGTAGCAGCCTGA