Detailed information of component protein


Summary

Component ID T6CP015416
Component protein type TssK
T6SS ID (Type) T6SS01219 experimental (Type i4a)
Strain Pseudomonas syringae pv. actinidiae str. Shaanxi_M228
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CN228_RS17570
Coordinate (Strand) 3621950..3623281 (-)
NCBI ID WP_017684345.1
RefSeq NZ_CP032631
Uniprot ID A0A0K8LVH0_PSESF, A0A0Q0DWR8_PSESX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.7e-27 20..386
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAAHLALAANPWYWGVTTLEIDPSALFAGQVRLLALDAICSDGLPLSIRVGSGVTVELDVNEAAAVSPTSTVTVYLAVSPLWRGGQLLPLNGRLQSLLGDALPDLASGKHPEVVTVWRPSPRLVTEANRADSICLPLLRLRKEGGGFIQLPYVPPTPLILPESVLGRRVAALCARAREKCMFLAGRLRMARQAGNLDDAEEIRLQSAALWARLPEVEGALGSRTATPQALHGLLLGMTGSWSVLDPLSGVPAYAPLNFLDLNLGYEDVLGWLERTLDQLRVGFRSVPFQQTEHVFSIMLPEQKARQRLVIGLRMPAGVSEQAAGEWLDRAIIASGSHIPMLARQRMSGLPHQAMGRQEQVAYSTGDDTRLFVIEASGQWFDPAQPLHITSSVAGAAVSPWQVILLTDNTQESA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9924 - -


  Protein sequence: 444 a.a.    

>T6CP015416 NZ_CP032631:c3623281-3621950 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssK]
MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAAHLALAANPWYWGVTTLEIDPSALFAGQVRLLALDAICSDGLPLSIRV
GSGVTVELDVNEAAAVSPTSTVTVYLAVSPLWRGGQLLPLNGRLQSLLGDALPDLASGKHPEVVTVWRPSPRLVTEANRA
DSICLPLLRLRKEGGGFIQLPYVPPTPLILPESVLGRRVAALCARAREKCMFLAGRLRMARQAGNLDDAEEIRLQSAALW
ARLPEVEGALGSRTATPQALHGLLLGMTGSWSVLDPLSGVPAYAPLNFLDLNLGYEDVLGWLERTLDQLRVGFRSVPFQQ
TEHVFSIMLPEQKARQRLVIGLRMPAGVSEQAAGEWLDRAIIASGSHIPMLARQRMSGLPHQAMGRQEQVAYSTGDDTRL
FVIEASGQWFDPAQPLHITSSVAGAAVSPWQVILLTDNTQESA*

  Nucleotide sequence: 1332 bp    

>T6CP015416 NZ_CP032631:c3623281-3621950 [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228] [TssK]
ATGAGCGTGCTACCCGATGCAGTCTGCTGGCACGAAGGCATGCAATTGCTGCCTCAGCACTTTCAGTTGCAAGGTTTGCG
TGCCGAGGCGCTGGCGGCTCATCTGGCGCTGGCCGCCAACCCTTGGTATTGGGGCGTCACGACGCTTGAAATCGACCCTT
CGGCGTTGTTTGCAGGGCAGGTGCGGCTTCTGGCGCTGGATGCCATTTGCTCCGACGGCCTGCCGTTGAGCATTCGTGTT
GGCTCCGGTGTCACGGTTGAACTGGACGTCAACGAAGCCGCCGCTGTGTCCCCGACCTCTACCGTTACGGTCTACCTTGC
CGTCAGCCCGTTATGGCGCGGCGGACAACTGCTGCCCCTCAACGGGCGTCTGCAATCGCTGTTGGGTGATGCTTTGCCTG
ACCTTGCCAGCGGCAAACACCCCGAGGTGGTGACAGTCTGGCGACCCAGCCCGCGTCTGGTGACCGAGGCGAACCGGGCT
GACTCGATCTGTCTGCCGCTGCTGCGCTTGCGCAAAGAGGGCGGCGGCTTTATCCAGTTGCCCTACGTGCCGCCGACTCC
GTTGATCCTGCCTGAATCCGTGCTGGGTCGCAGGGTGGCTGCGCTGTGTGCCAGGGCCCGGGAAAAATGCATGTTTCTGG
CCGGTCGCCTGCGCATGGCCCGCCAGGCTGGCAACCTGGATGATGCCGAAGAGATTCGCCTGCAGAGCGCAGCATTGTGG
GCACGTCTGCCCGAAGTCGAAGGTGCGCTGGGCAGTCGAACCGCGACACCACAGGCATTGCATGGCCTGTTGCTGGGCAT
GACCGGCAGTTGGTCGGTCCTTGATCCGCTCAGCGGCGTGCCCGCGTACGCACCCCTGAATTTTCTTGATCTGAACCTGG
GCTACGAAGACGTGCTGGGCTGGCTGGAGCGAACGCTCGATCAGTTGCGGGTCGGGTTTCGCAGCGTGCCGTTTCAGCAG
ACCGAGCATGTTTTTTCGATCATGTTGCCCGAGCAGAAAGCCCGTCAGCGGCTGGTGATCGGTTTACGCATGCCTGCCGG
CGTTTCGGAACAGGCCGCTGGCGAATGGCTGGACCGGGCAATCATTGCGTCCGGGTCTCACATCCCGATGCTGGCCCGCC
AGCGCATGAGCGGTCTGCCTCATCAGGCGATGGGGCGTCAGGAACAGGTGGCCTACAGCACGGGCGACGACACGCGCCTG
TTCGTCATCGAGGCCAGCGGCCAGTGGTTCGATCCTGCTCAACCGTTGCACATCACCTCGTCTGTGGCTGGCGCAGCTGT
CAGCCCCTGGCAAGTGATTCTGTTGACAGATAACACCCAAGAGTCCGCCTGA