Detailed information of component protein


Summary

Component ID T6CP015382
Component protein type TssF
T6SS ID (Type) T6SS01216 experimental (Type Unknown)
Strain Klebsiella pneumoniae strain Kp52.145
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BN49_RS18735
Coordinate (Strand) 3481108..3482871 (-)
NCBI ID WP_046043540.1
RefSeq NZ_FO834906
Uniprot ID W9B9K1_KLEPN
KEGG ID kpnk:BN49_3359
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5.8e-180 1..582
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MDDLTLRYFDAEMRYLREAAKALAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLWPHYLRTIPSLSIVALTPTLPAMKMAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRFACSELADWSQTDLRRLALYLGEDAVTGSALHLWLTRRQAALYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGYQLLLEYFTFREKFMFVQLNGLENITLPVGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLESEYLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPKRYYHTRVKRGVTGMHDTWLILGGQGWEADRELARETISLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAEVLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQFNQLTLIVQPEGKCIRWKENHSLRLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9924 - -


  Protein sequence: 588 a.a.    

>T6CP015382 NZ_FO834906:c3482871-3481108 [Klebsiella pneumoniae] [TssF]
MDDLTLRYFDAEMRYLREAAKALAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLW
PHYLRTIPSLSIVALTPTLPAMKMAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRF
ACSELADWSQTDLRRLALYLGEDAVTGSALHLWLTRRQAALYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGY
QLLLEYFTFREKFMFVQLNGLENITLPVGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLESE
YLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPKRYYHTRVKRGVTGMHDTWLILGGQGWEAD
RELARETISLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAE
VLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQ
FNQLTLIVQPEGKCIRWKENHSLRLPG*

  Nucleotide sequence: 1764 bp    

>T6CP015382 NZ_FO834906:c3482871-3481108 [Klebsiella pneumoniae] [TssF]
ATGGACGATTTAACCCTGCGATATTTTGATGCTGAAATGCGCTACCTGCGCGAGGCGGCAAAAGCGCTCGCGCAGGCTCA
CCCCGATCGGGCGGCGATGCTGGATCTCGATAAAGCCGGTACGCCGGACCCTTACGTTGAGCGCCTGTTTGAAGGCTTTG
CCTTTTCCGTAGGTCGCTTGCGCGAAAAAATTGATGATGATCTGCCGGAGCTGACCGAGGGGCTGGTCAGCATGCTGTGG
CCGCACTATTTGCGCACTATTCCATCGCTATCGATCGTAGCGCTGACCCCAACGCTGCCGGCGATGAAGATGGCGGAAAC
GGTGCCCGCCGGGTTTGAGATTAGCTCCCGCCCACTGGGGCCGAAAAATACCGTGTGCCGGTACCGAACCACCCGCGATC
TGACGCTTAACCCGCTGGCGATAGAGGAGGCGGTGATGACGGCGGAGCCGGACGGACGTTCGGCCCTGCGACTACGATTC
GCCTGTAGCGAGCTGGCTGACTGGTCGCAGACCGATCTCCGCCGCCTGGCGCTGTACCTGGGGGAAGACGCTGTTACCGG
CAGCGCCCTCCATCTGTGGCTGACCCGACGCCAGGCCGCGCTGTACCTGCGTCTGCCGGGTCAGACAGAGCGGGTAAGCC
TCGACGGCTATTTTTCCCCGGGGGGATTCAGCGAGGAGGATCGTTTATGGCCGAAGGGGGAGAGCGCTTTCAGCGGCTAT
CAGCTGCTGCTCGAGTATTTCACCTTTCGCGAAAAATTTATGTTCGTGCAGCTAAATGGCCTGGAAAACATCACCCTGCC
GGTGGGGATATCGCATTTCACGCTTGAGGTGGTGTTCAGCGAGGTCTGGCAAAGTGATTTACCCGTCAGCGCAAGCAGCC
TGCGCCTGCACTGTGTGCCGGTGATTAACCTGTTTACCCTTGAGGCCGATCCGTTGACCATCAGCGGGCTGGAGAGCGAA
TACCTCCTGCGTCCGAAGCGCCTGCAGGACGGGCATACCGAAATCTATTCTGTTGACAGCGTGACCGGCTCCGGGCGCAC
CGGGGAGGCACGCTATGTGCCTTTCACCCGCTTTCGTCACCAGGGGGGAATGATGCGTCGCCATGCGCCGAAGCGCTACT
ACCACACCCGCGTAAAACGGGGCGTAACCGGCATGCACGATACCTGGCTTATCCTCGGCGGACAGGGATGGGAGGCTGAC
CGGGAGCTGGCGCGGGAAACGATCTCCTTGCGCATCACCGGCACTAACGGCCAGCTGCCGCGCCGGGCGCTACAGAGCAC
GCTGCTGGATCGCTGTGAGTCGATATCAGCCACGCCGCTTACCGTCCGCAATCTCTGTAAGCCCACGCTGCCGGCCTATC
CCCCGGCGGAAGACCGCTACCACTGGCGGGTCATGAGCCATCTGGGCACCCGTTTTCTCAACATGATGAGCAGCGCCGAG
GTGCTGCGCGGCACGCTGTCGCTCTACAACTGGCGGGAGGATGAGCTCAATAATCGCCGTCTGGACGCCATTCTGGCGGT
CAGCCATCACCGAATTCAGCGTTTCGAGCAGGGCTTCCTGCTGCGCGGGCTGGATATCGAAGTGACGCTCGACGGTAGCG
GATTTACCGGTGCGGGCGATGTCCACCTGTTTGGCGATATGCTCAACCGCTTTTTCGCACTGTATGCCGATATGAATCAG
TTCAACCAGCTGACGCTCATTGTTCAACCTGAAGGGAAATGTATCCGGTGGAAAGAGAATCACAGTCTGCGCCTGCCCGG
CTGA