Detailed information of component protein
Summary
| Component ID | T6CP015380 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01216  (Type Unknown) |
| Strain | Klebsiella pneumoniae strain Kp52.145 |
| Replicon | chromosome |
| Sequence | Protein sequence (179 a.a.); Nucleotide sequence (537 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BN49_RS18725 |
| Coordinate (Strand) | 3479545..3480081 (-) |
| NCBI ID | WP_077255016.1 |
| RefSeq | NZ_FO834906 |
| Uniprot ID | UPI000461584A |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 6.4e-33 | 47..167 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-178 | MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVFTRDELDPARPRIIEASQNQLTLHPFKEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9977 | pos: 23-24. LTG-CG. | MAITAVKPSARLLAFLMVTVLTG |
Protein sequence: 179 a.a.
>T6CP015380 NZ_FO834906:c3480081-3479545 [Klebsiella pneumoniae] [TssJ]
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVFTRDELDPARP
RIIEASQNQLTLHPFKEK*
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVFTRDELDPARP
RIIEASQNQLTLHPFKEK*
Nucleotide sequence: 537 bp
>T6CP015380 NZ_FO834906:c3480081-3479545 [Klebsiella pneumoniae] [TssJ]
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGTGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTATTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGTGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTATTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA