Detailed information of component protein


Summary

Component ID T6CP015369
Component protein type TssC
T6SS ID (Type) T6SS01215 experimental (Type i2)
Strain Klebsiella pneumoniae strain Kp52.145
Replicon chromosome
Sequence Protein sequence (513 a.a.); Nucleotide sequence (1539 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BN49_RS14025
Coordinate (Strand) 2565074..2566612 (+)
NCBI ID WP_016530463.1
RefSeq NZ_FO834906
Uniprot ID UPI000352C540
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.5e-119 89..389
VipB_2 PF18945.2 2.2e-36 399..507
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-512 MSVTTENAPVQGQTTLQENSAGEGVYASLFEKINLTPASRLGDINDFLDDAALSEAPAAERLTAAMQVFMERIRQSGQRVEKLDKTLIDHHIAELDFQISRQLDAVMHHQEFQQVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISRVSAAAHMPFIGAVGPAFFLKETMEEVAAIKDIGNYFDRAEYIRWKAFRETDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSAAFSFASNMVKSFVNNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFASLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELNTWVRSLVTEMTDPGDELQASHPLHDASVVVEDIEDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9856 - -


  Protein sequence: 513 a.a.    

>T6CP015369 NZ_FO834906:2565074-2566612 [Klebsiella pneumoniae] [TssC]
MSVTTENAPVQGQTTLQENSAGEGVYASLFEKINLTPASRLGDINDFLDDAALSEAPAAERLTAAMQVFMERIRQSGQRV
EKLDKTLIDHHIAELDFQISRQLDAVMHHQEFQQVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDAPELIQS
GLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISRVSAAAHMPFIGAVGPAFFLKETMEEVAAIKDIGNYFD
RAEYIRWKAFRETDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSAAFSFASNMVKSFVNNGWCV
QIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFASLGFIPLSYYKNRDYACFFSANSAQKPALYDTADAT
ANSRINARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELNTWVRSLVTEMTDPGDELQASHPLHDASVVVEDIEDNPG
FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1539 bp    

>T6CP015369 NZ_FO834906:2565074-2566612 [Klebsiella pneumoniae] [TssC]
ATGTCTGTTACCACAGAAAACGCCCCTGTTCAGGGGCAAACCACGCTGCAGGAAAACAGCGCGGGCGAGGGCGTTTACGC
CTCGCTGTTTGAAAAAATTAATCTCACCCCGGCGTCTCGCCTCGGGGATATCAACGACTTTCTGGACGATGCCGCGCTCT
CCGAGGCGCCGGCGGCGGAACGTCTCACCGCGGCGATGCAGGTGTTTATGGAACGCATCCGTCAGTCCGGCCAGCGGGTG
GAAAAGCTCGACAAAACGCTGATCGACCACCATATCGCCGAGCTGGATTTCCAGATAAGCCGTCAGCTGGACGCGGTGAT
GCACCATCAGGAGTTTCAGCAGGTCGAATCCCTGTGGCGCGGCCTCAAACAGCTGGTGGACAACACCGACTATCGGCAGA
ACGTCAAAACGGAGATCCTCGACGTCGCCAAAGACGATCTGCGCCAGGACTTTGAGGACGCGCCGGAGCTTATCCAGAGC
GGCCTCTACTGGCACACCTATACCGCGGAGTATGACACTCCCGGCGGCGAGCCGATCGGCTCGGTGATCTCGGCCTATGA
GTTCGACGCCAGCCCGCAGGATGTGGCGCTGCTGCGCAATATCTCCCGCGTCTCTGCGGCCGCCCATATGCCGTTTATCG
GCGCCGTCGGCCCGGCCTTCTTCCTGAAAGAGACCATGGAAGAGGTGGCTGCCATTAAGGATATCGGCAACTACTTCGAT
CGTGCGGAATATATCCGCTGGAAGGCGTTTCGCGAAACTGACGATGCCCGCTACATCGGTCTGGTGATGCCGCGCGTGCT
GGGTCGTCTGCCGTACGGTCCGGACACCGTGCCGGTGCGCAGCTTCAACTATGTCGAGCAGGTGAAAGGTCCGGACCACG
AAAAGTATCTCTGGACCAGCGCGGCGTTCTCCTTCGCTTCCAATATGGTGAAGAGCTTTGTCAATAACGGCTGGTGCGTG
CAAATTCGCGGTCCGCAGGCCGGCGGCGCGGTGAAAGATCTGCCCATCCATCTGTACGATCTGGGCACCGGCAACCAGGT
GAAAATTCCTTCCGAGGTGATGATCCCGGAAACGCGGGAGTTTGAGTTCGCCAGCCTGGGCTTTATCCCGCTGTCGTACT
ACAAAAATCGCGATTACGCCTGCTTCTTCTCGGCCAACTCCGCGCAGAAACCGGCGCTGTACGATACCGCCGACGCCACC
GCCAACAGCCGTATCAACGCGCGTCTGCCTTATATCTTCCTGCTGTCGCGCATCGCGCACTACCTGAAGATGATCCAGCG
CGAGAATATTGGCACCACCAAGGACCGGCGTCTGCTGGAGCTGAACACCTGGGTGCGGAGCCTGGTGACCGAAATGACCG
ACCCCGGCGACGAGCTGCAGGCCTCCCATCCGCTGCACGATGCCAGCGTGGTGGTGGAAGATATCGAGGATAACCCGGGC
TTCTTCCGCGTGAAGCTGTACGCGGTGCCGCACTTCCAGGTCGAGGGGATGGACGTCAATCTGTCGCTGGTTAGCCAGAT
GCCAAAGGCGAAGGCGTAG