Detailed information of component protein
Summary
| Component ID | T6CP015362 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS01214  (Type Unknown) |
| Strain | Klebsiella pneumoniae strain Kp52.145 |
| Replicon | chromosome |
| Sequence | Protein sequence (140 a.a.); Nucleotide sequence (420 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BN49_RS05995 |
| Coordinate (Strand) | 957477..957896 (-) |
| NCBI ID | WP_162869795.1 |
| RefSeq | NZ_FO834906 |
| Uniprot ID | UPI00039CB443 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-139 | MQKNTGTTQMSELLQQLTRNCFSDRDATAVAQEQAALWQSWLLPVTEDSPVGEDPGYHDDFLLMRDEMNKSTAQGLTLTQWESELLFEVKTRQLKLLRLRAHRHADKAALARKMGNLLGTLVVMDPARAAVLCDTQHKD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9831 | - | - |
Protein sequence: 140 a.a.
>T6CP015362 NZ_FO834906:c957896-957477 [Klebsiella pneumoniae] [TssA]
MQKNTGTTQMSELLQQLTRNCFSDRDATAVAQEQAALWQSWLLPVTEDSPVGEDPGYHDDFLLMRDEMNKSTAQGLTLTQ
WESELLFEVKTRQLKLLRLRAHRHADKAALARKMGNLLGTLVVMDPARAAVLCDTQHKD*
MQKNTGTTQMSELLQQLTRNCFSDRDATAVAQEQAALWQSWLLPVTEDSPVGEDPGYHDDFLLMRDEMNKSTAQGLTLTQ
WESELLFEVKTRQLKLLRLRAHRHADKAALARKMGNLLGTLVVMDPARAAVLCDTQHKD*
Nucleotide sequence: 420 bp
>T6CP015362 NZ_FO834906:c957896-957477 [Klebsiella pneumoniae] [TssA]
ATGCAGAAGAATACAGGGACAACGCAGATGAGTGAGTTACTGCAACAGTTAACCCGGAATTGTTTCTCTGACCGGGATGC
GACGGCCGTCGCACAGGAGCAGGCTGCACTGTGGCAGAGCTGGCTGCTGCCGGTGACGGAGGATTCGCCGGTGGGTGAAG
ACCCCGGCTATCATGACGATTTTTTGCTGATGCGCGACGAAATGAACAAATCCACCGCGCAGGGGCTGACGCTGACGCAG
TGGGAATCGGAACTGCTGTTTGAGGTAAAAACGCGGCAACTGAAGCTGTTGCGCCTGCGGGCGCACCGCCACGCGGACAA
AGCGGCGCTTGCCCGGAAAATGGGAAACCTGCTGGGAACGCTGGTGGTAATGGATCCGGCACGGGCGGCGGTACTGTGCG
ACACGCAGCATAAGGACTGA
ATGCAGAAGAATACAGGGACAACGCAGATGAGTGAGTTACTGCAACAGTTAACCCGGAATTGTTTCTCTGACCGGGATGC
GACGGCCGTCGCACAGGAGCAGGCTGCACTGTGGCAGAGCTGGCTGCTGCCGGTGACGGAGGATTCGCCGGTGGGTGAAG
ACCCCGGCTATCATGACGATTTTTTGCTGATGCGCGACGAAATGAACAAATCCACCGCGCAGGGGCTGACGCTGACGCAG
TGGGAATCGGAACTGCTGTTTGAGGTAAAAACGCGGCAACTGAAGCTGTTGCGCCTGCGGGCGCACCGCCACGCGGACAA
AGCGGCGCTTGCCCGGAAAATGGGAAACCTGCTGGGAACGCTGGTGGTAATGGATCCGGCACGGGCGGCGGTACTGTGCG
ACACGCAGCATAAGGACTGA