Detailed information of component protein


Summary

Component ID T6CP015361
Component protein type TssF
T6SS ID (Type) T6SS01214 experimental (Type Unknown)
Strain Klebsiella pneumoniae strain Kp52.145
Replicon chromosome
Sequence Protein sequence (587 a.a.); Nucleotide sequence (1761 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BN49_RS05970
Coordinate (Strand) 953338..955098 (-)
NCBI ID WP_016531437.1
RefSeq NZ_FO834906
Uniprot ID W9BN82_KLEPN
KEGG ID kpnk:BN49_0934
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.8e-182 1..583
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-586 MDDLTQRYYEAEMRYLREAGKEFAQAYPDRAAMLNLDKPGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLWPHYLRTIPSLSVVELLTDHRQMKQSETLSDFQVLSRPVGEHRTRCCYSATRDITLLPLALPEVSLLYEQDGRSVIRLRFECSPLAGDGSQIDLSRLPLYLNADSPLACALHRALTLGVQQIWFRLPGEERRTLDGYFSPMGFGKDDPLWPKGESAFSGYQLLLEYFTFREKFMFVALNGLENVVWPAGMSGFEIDVVLAESWSHDLPFSTENIRLHCVPVINLFPLEADPLHLSPLENEYLLRPMRIQDGHTEIYSVDNIISSRHTGSQAYVPFSSFRHRGGMLRHDSPERYYHTRVKRGPSGLHDTWLILGGDAFDIDRLLEDETLSLSLTGTNGQLPRKALQSTVLDPPVYATQHTLRVRNLCAPTQPCYPPARDRFHWRVLSHLGSNFLSMMDNAEILRGTLALYDWTESEMNRRRLEAIVDVQHHLIQRFEKGFLLRGVDIQVTLDSNGFAGEGDITLFGELLHRFFALYADIHLFTQLTLILQPTGKCLQWTEHHSQRVPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -


  Protein sequence: 587 a.a.    

>T6CP015361 NZ_FO834906:c955098-953338 [Klebsiella pneumoniae] [TssF]
MDDLTQRYYEAEMRYLREAGKEFAQAYPDRAAMLNLDKPGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLW
PHYLRTIPSLSVVELLTDHRQMKQSETLSDFQVLSRPVGEHRTRCCYSATRDITLLPLALPEVSLLYEQDGRSVIRLRFE
CSPLAGDGSQIDLSRLPLYLNADSPLACALHRALTLGVQQIWFRLPGEERRTLDGYFSPMGFGKDDPLWPKGESAFSGYQ
LLLEYFTFREKFMFVALNGLENVVWPAGMSGFEIDVVLAESWSHDLPFSTENIRLHCVPVINLFPLEADPLHLSPLENEY
LLRPMRIQDGHTEIYSVDNIISSRHTGSQAYVPFSSFRHRGGMLRHDSPERYYHTRVKRGPSGLHDTWLILGGDAFDIDR
LLEDETLSLSLTGTNGQLPRKALQSTVLDPPVYATQHTLRVRNLCAPTQPCYPPARDRFHWRVLSHLGSNFLSMMDNAEI
LRGTLALYDWTESEMNRRRLEAIVDVQHHLIQRFEKGFLLRGVDIQVTLDSNGFAGEGDITLFGELLHRFFALYADIHLF
TQLTLILQPTGKCLQWTEHHSQRVPG*

  Nucleotide sequence: 1761 bp    

>T6CP015361 NZ_FO834906:c955098-953338 [Klebsiella pneumoniae] [TssF]
ATGGACGACCTGACCCAACGCTATTACGAAGCCGAAATGCGCTACCTGCGTGAAGCGGGTAAAGAGTTTGCACAAGCGTA
TCCTGATCGCGCCGCTATGCTCAATCTCGATAAGCCCGGCGCGCGCGACCCTTATGTCGAACGTCTCTTCGAAGGTTTCG
CCTTCCTGATGGGCCGCCTGCGGGAAAAACTGGATGACGATCTACCTGAACTGACTGAGGGGCTGGTGAGCCTCCTGTGG
CCTCATTATCTGCGTACAATCCCGTCGCTGTCGGTGGTGGAACTGTTAACCGATCATCGGCAAATGAAGCAGAGCGAAAC
ACTGAGTGATTTTCAGGTGCTCTCGAGGCCCGTCGGCGAACACCGGACACGTTGCTGCTACAGCGCCACGCGGGATATCA
CCCTGCTTCCGCTGGCTTTACCAGAGGTGTCGTTACTGTACGAACAGGATGGACGCTCGGTTATCCGTCTGCGCTTTGAG
TGCAGCCCGCTGGCTGGCGACGGGTCACAGATTGATTTATCGAGACTGCCGCTCTATCTCAATGCGGACAGTCCGCTGGC
TTGTGCATTACACCGGGCGCTGACGCTGGGGGTGCAGCAAATCTGGTTTCGCCTGCCGGGGGAGGAACGTCGGACACTGG
ACGGCTATTTTTCCCCGATGGGGTTCGGTAAGGACGATCCGCTCTGGCCAAAAGGCGAATCGGCCTTCAGCGGCTACCAA
CTGCTGCTGGAGTATTTCACCTTCCGCGAGAAGTTTATGTTTGTCGCCCTCAACGGGCTGGAGAATGTGGTCTGGCCGGC
AGGAATGAGTGGATTCGAAATTGACGTGGTGCTCGCGGAAAGCTGGTCTCACGATCTGCCGTTCAGCACCGAAAATATCC
GCCTGCACTGCGTACCGGTGATCAACCTGTTCCCGCTGGAAGCCGATCCACTGCATCTTTCTCCGCTGGAAAATGAATAC
TTGCTGCGCCCCATGCGTATTCAGGACGGGCATACGGAAATTTACTCCGTCGATAATATTATTTCTTCGCGACACACCGG
CAGTCAGGCATATGTGCCCTTTTCCAGTTTTCGCCACCGGGGCGGGATGTTGCGTCACGATTCGCCGGAACGTTATTACC
ATACGCGGGTAAAACGCGGCCCTTCCGGTTTGCATGATACCTGGCTGATCCTTGGGGGCGACGCATTCGATATCGACCGC
CTGCTGGAAGACGAAACCCTGTCCCTGAGCCTGACCGGCACCAACGGTCAGCTTCCGCGTAAAGCGCTGCAGAGCACGGT
GCTGGACCCCCCCGTCTACGCCACGCAGCATACACTGCGGGTGCGCAACCTGTGCGCGCCGACGCAGCCCTGTTATCCCC
CGGCGCGTGACCGTTTCCACTGGCGGGTTCTCAGCCACTTAGGCTCCAACTTCCTGTCAATGATGGACAACGCCGAAATC
TTGCGCGGCACGCTGGCGCTGTACGACTGGACGGAAAGCGAAATGAACCGACGCCGTCTGGAGGCAATCGTTGACGTTCA
GCATCACCTGATTCAGCGTTTTGAAAAAGGTTTTCTACTGCGCGGCGTGGATATTCAGGTCACGCTGGACAGCAACGGTT
TCGCCGGCGAAGGCGATATCACCCTGTTTGGCGAACTGCTGCACCGCTTTTTCGCCCTGTATGCCGACATCCACTTATTT
ACTCAGTTGACGCTGATTCTGCAACCTACAGGAAAATGTTTGCAATGGACAGAACACCACAGCCAGCGCGTACCGGGCTG
A