Detailed information of component protein


Summary

Component ID T6CP015359
Component protein type TssJ
T6SS ID (Type) T6SS01214 experimental (Type Unknown)
Strain Klebsiella pneumoniae strain Kp52.145
Replicon chromosome
Sequence Protein sequence (93 a.a.); Nucleotide sequence (279 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BN49_RS05945
Coordinate (Strand) 950438..950716 (-)
NCBI ID -
RefSeq NZ_FO834906
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 4.6e-14 2..81
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-92 NYDTLLMQEEKTLKSDVLAKHTVWMKPAGAVSLNVPLDKETQFIAIVGQFYHPDEQSNSWRLVLKRDELEADRPRTIELMRSDLRLLPLQDK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -


  Protein sequence: 93 a.a.    

>T6CP015359 NZ_FO834906:c950716-950438 [Klebsiella pneumoniae] [TssJ]
NYDTLLMQEEKTLKSDVLAKHTVWMKPAGAVSLNVPLDKETQFIAIVGQFYHPDEQSNSWRLVLKRDELEADRPRTIELM
RSDLRLLPLQDK*

  Nucleotide sequence: 279 bp    

>T6CP015359 NZ_FO834906:c950716-950438 [Klebsiella pneumoniae] [TssJ]
AACTATGACACGCTGCTTATGCAGGAAGAAAAAACGCTGAAATCAGATGTACTGGCCAAACATACCGTCTGGATGAAGCC
AGCGGGTGCGGTTTCCCTGAATGTCCCTCTGGATAAAGAGACCCAGTTTATCGCCATCGTTGGTCAGTTTTATCACCCCG
ATGAACAAAGCAACAGTTGGCGATTGGTACTCAAAAGGGATGAACTGGAAGCTGACAGGCCCCGCACCATAGAGCTGATG
AGAAGCGATCTCCGCCTGCTCCCCCTTCAGGATAAGTAA