Detailed information of component protein
Summary
| Component ID | T6CP015358 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01214  (Type Unknown) |
| Strain | Klebsiella pneumoniae strain Kp52.145 |
| Replicon | chromosome |
| Sequence | Protein sequence (142 a.a.); Nucleotide sequence (426 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BN49_RS05940 |
| Coordinate (Strand) | 950009..950434 (-) |
| NCBI ID | WP_004181152.1 |
| RefSeq | NZ_FO834906 |
| Uniprot ID | A6TDA8_KLEP7, A0A0C7K8D5_KLEPN |
| KEGG ID | kpx:PMK1_00662, kpn:KPN_03181 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 6.5e-12 | 31..112 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-141 | MAASSLFEMLTFSFSGELPLEQVSERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSMIHQGMTAGIHGLIHQIEETLLRYEPRLSQLRVELQPQPRPGHLNYLIYAQLPDTGWIRFDGIFSAEGRIVLRHLKQQERA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9757 | - | - |
Protein sequence: 142 a.a.
>T6CP015358 NZ_FO834906:c950434-950009 [Klebsiella pneumoniae] [TssE]
MAASSLFEMLTFSFSGELPLEQVSERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSMIHQGMTAGIHGLIHQIEET
LLRYEPRLSQLRVELQPQPRPGHLNYLIYAQLPDTGWIRFDGIFSAEGRIVLRHLKQQERA*
MAASSLFEMLTFSFSGELPLEQVSERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSMIHQGMTAGIHGLIHQIEET
LLRYEPRLSQLRVELQPQPRPGHLNYLIYAQLPDTGWIRFDGIFSAEGRIVLRHLKQQERA*
Nucleotide sequence: 426 bp
>T6CP015358 NZ_FO834906:c950434-950009 [Klebsiella pneumoniae] [TssE]
ATGGCAGCATCTTCTTTATTTGAAATGCTGACTTTCAGCTTCAGTGGCGAGCTGCCGCTGGAGCAGGTCAGCGAGCGGGA
TCAGCTTATTCTCTCCGTTATGGACAACATGCAGCGCATCATCAACTGCCGGGCAGGAACGCTGGCGCATTTACCGGATT
ATGGTTTGCCGGACCTCAGCATGATTCATCAGGGAATGACCGCGGGTATTCATGGTTTGATACACCAGATAGAAGAGACG
TTACTGCGCTACGAACCCCGCCTGAGCCAGTTGCGCGTGGAGTTGCAGCCGCAGCCACGTCCGGGGCATCTCAATTATCT
TATTTATGCCCAACTTCCCGATACCGGCTGGATACGCTTTGATGGTATATTTTCTGCGGAAGGCCGGATTGTGCTGCGTC
ATCTTAAACAGCAGGAGCGCGCGTGA
ATGGCAGCATCTTCTTTATTTGAAATGCTGACTTTCAGCTTCAGTGGCGAGCTGCCGCTGGAGCAGGTCAGCGAGCGGGA
TCAGCTTATTCTCTCCGTTATGGACAACATGCAGCGCATCATCAACTGCCGGGCAGGAACGCTGGCGCATTTACCGGATT
ATGGTTTGCCGGACCTCAGCATGATTCATCAGGGAATGACCGCGGGTATTCATGGTTTGATACACCAGATAGAAGAGACG
TTACTGCGCTACGAACCCCGCCTGAGCCAGTTGCGCGTGGAGTTGCAGCCGCAGCCACGTCCGGGGCATCTCAATTATCT
TATTTATGCCCAACTTCCCGATACCGGCTGGATACGCTTTGATGGTATATTTTCTGCGGAAGGCCGGATTGTGCTGCGTC
ATCTTAAACAGCAGGAGCGCGCGTGA