Detailed information of component protein


Summary

Component ID T6CP015334
Component protein type TssA
T6SS ID (Type) T6SS01212 experimental (Type i4a)
Strain Pseudomonas aeruginosa PAK
Replicon chromosome
Sequence Protein sequence (367 a.a.); Nucleotide sequence (1101 bp)
Reference
[1] Chen R, Weng Y, Zhu F, et al. Polynucleotide Phosphorylase Regulates Multiple Virulence Factors and the Stabilities of Small RNAs RsmY/Z in Pseudomonas aeruginosa. Front Microbiol. 2016 Mar 2;7:247. doi: 10.3389/fmicb.2016.00247. eCollection 2016. PMID: 26973625
[2] Li K, Xu C, Jin Y, et al. SuhB is a regulator of multiple virulence genes and essential for pathogenesis of Pseudomonas aeruginosa. mBio. 2013 Oct 29;4(6):e00419-13. doi: 10.1128/mBio.00419-13. PMID: 24169572
[3] Brencic A, Lory S. Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA. Mol Microbiol. 2009 May;72(3):612-32. doi: 10.1111/j.1365-2958.2009.06670.x. PMID: 19426209
[4] Marden JN, Diaz MR, Walton WG, et al. An unusual CsrA family member operates in series with RsmA to amplify posttranscriptional responses in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15055-60. doi: 10.1073/pnas.1307217110. Epub 2013 Aug 26. PMID: 23980177
[5] Aragon IM, Pérez-Mendoza D, Moscoso JA, et al. Diguanylate cyclase DgcP is involved in plant and human Pseudomonas spp. infections. Environ Microbiol. 2015 Nov;17(11):4332-51. doi: 10.1111/1462-2920.12856. Epub 2015 Apr 28. PMID: 25809128
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) Y880_RS09145
Coordinate (Strand) 1913764..1914864 (-)
NCBI ID WP_016253425.1
RefSeq NZ_CP020659
Uniprot ID UPI00033F0A20
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.7e-37 16..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-366 MTLPLSGNALSLEVLLEPIDPGQPCGPSLRYDPDYDRLRELRREDDSSLPTGVWQAEAKRADWAAVEQLASELLQRRSKDLMLAAWLGEAWLQRGGLGGLQRALVLLAELCERYPEEVHPQAQDGDQSWRVPPIDWLLRRYAELLHTRLPLMGQGAFAEITLYAWQRLQRQQVASGDSKSAKAALEAAQLQQRKLDEALRAEPLVQWQRKQASLLACQQQLQRLEQWCDRCLGELAPSCQPLREVIAQWLALLKEFIAMHPQAPLSEEQPPVAEADASEGDADGEESLPASAPSGPAGAPTSREDAYRQLLLIADYLARTEPHSPVPYLIKRAVEWGNKPLSELLAELINADSEARRVWSLLGVLP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9213 - -


  Protein sequence: 367 a.a.    

>T6CP015334 NZ_CP020659:c1914864-1913764 [Pseudomonas aeruginosa PAK] [TssA]
MTLPLSGNALSLEVLLEPIDPGQPCGPSLRYDPDYDRLRELRREDDSSLPTGVWQAEAKRADWAAVEQLASELLQRRSKD
LMLAAWLGEAWLQRGGLGGLQRALVLLAELCERYPEEVHPQAQDGDQSWRVPPIDWLLRRYAELLHTRLPLMGQGAFAEI
TLYAWQRLQRQQVASGDSKSAKAALEAAQLQQRKLDEALRAEPLVQWQRKQASLLACQQQLQRLEQWCDRCLGELAPSCQ
PLREVIAQWLALLKEFIAMHPQAPLSEEQPPVAEADASEGDADGEESLPASAPSGPAGAPTSREDAYRQLLLIADYLART
EPHSPVPYLIKRAVEWGNKPLSELLAELINADSEARRVWSLLGVLP*

  Nucleotide sequence: 1101 bp    

>T6CP015334 NZ_CP020659:c1914864-1913764 [Pseudomonas aeruginosa PAK] [TssA]
ATGACCCTGCCTCTTTCCGGCAACGCCCTGTCCCTGGAAGTGCTGCTCGAACCGATCGACCCCGGACAGCCGTGCGGCCC
CAGCCTGCGCTACGACCCGGACTACGACCGCCTGCGCGAGTTGCGCCGGGAGGACGACAGCAGCCTGCCGACCGGCGTCT
GGCAGGCGGAGGCCAAGCGCGCCGACTGGGCCGCGGTGGAGCAGTTGGCCAGCGAACTGTTGCAGCGGCGCAGCAAGGAC
CTGATGCTCGCCGCCTGGCTCGGCGAGGCCTGGCTGCAACGCGGCGGACTGGGCGGATTGCAGCGCGCGCTGGTGCTGCT
GGCGGAACTCTGCGAGCGCTACCCCGAGGAGGTGCATCCGCAAGCCCAGGACGGCGACCAGTCGTGGCGGGTGCCGCCCA
TCGACTGGCTGTTGCGCCGCTATGCCGAGCTGCTGCACACGCGCCTGCCGCTGATGGGGCAGGGCGCGTTCGCCGAGATC
ACCCTCTATGCCTGGCAGAGGTTGCAACGCCAGCAGGTCGCCAGCGGCGACAGCAAGAGCGCCAAGGCGGCGCTGGAAGC
GGCGCAACTTCAACAGAGGAAGCTCGACGAAGCGTTGCGCGCGGAGCCCCTGGTGCAATGGCAGCGCAAGCAGGCCAGCC
TGCTCGCCTGCCAGCAGCAACTGCAGCGCCTGGAACAGTGGTGCGACCGCTGCCTGGGCGAACTCGCCCCCAGTTGCCAG
CCATTGCGCGAGGTCATCGCGCAATGGCTGGCCTTGCTCAAGGAGTTCATCGCCATGCACCCGCAAGCGCCGCTGTCCGA
AGAACAGCCCCCGGTCGCGGAGGCGGATGCCAGCGAAGGCGACGCGGACGGCGAGGAAAGCCTCCCGGCGAGCGCGCCGA
GCGGGCCGGCTGGCGCGCCGACCAGTCGCGAGGACGCCTACCGGCAATTGCTGCTGATCGCTGACTACCTGGCGCGCACC
GAGCCGCACAGCCCGGTTCCCTACCTGATCAAGCGCGCGGTGGAGTGGGGCAACAAGCCGCTGAGCGAGTTGCTGGCGGA
GCTGATCAATGCGGACTCGGAGGCGCGCCGAGTCTGGTCGCTGCTTGGCGTACTGCCCTAA