Detailed information of component protein
Summary
| Component ID | T6CP015201 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01197  (Type i2) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (176 a.a.); Nucleotide sequence (528 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS17415 |
| Coordinate (Strand) | 200911..201438 (+) |
| NCBI ID | WP_006494498.1 |
| RefSeq | NZ_HG938371 |
| Uniprot ID | UPI0002343ACE |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 5.5e-30 | 44..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-175 | MSIRFAVSTFLSAWLLSACGAWQSVSDASSSAYQAVFFKQVKVLNVDLSAREALNPDDAGRATSVAVRVYQLKDRKMFDGASYEDLLKNDRTVLAQDLQANLAAVLNPGASASLAQPMQADTKYVAVVAFYRNPGNGDGWKYVIEKKKLDADKPLKLELVDQLLLASGAIRNTSR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9903 | pos: 18-19. LSA-CG. | MSIRFAVSTFLSAWLLSA |
Protein sequence: 176 a.a.
>T6CP015201 NZ_HG938371:200911-201438 [Burkholderia cenocepacia H111] [TssJ]
MSIRFAVSTFLSAWLLSACGAWQSVSDASSSAYQAVFFKQVKVLNVDLSAREALNPDDAGRATSVAVRVYQLKDRKMFDG
ASYEDLLKNDRTVLAQDLQANLAAVLNPGASASLAQPMQADTKYVAVVAFYRNPGNGDGWKYVIEKKKLDADKPLKLELV
DQLLLASGAIRNTSR*
MSIRFAVSTFLSAWLLSACGAWQSVSDASSSAYQAVFFKQVKVLNVDLSAREALNPDDAGRATSVAVRVYQLKDRKMFDG
ASYEDLLKNDRTVLAQDLQANLAAVLNPGASASLAQPMQADTKYVAVVAFYRNPGNGDGWKYVIEKKKLDADKPLKLELV
DQLLLASGAIRNTSR*
Nucleotide sequence: 528 bp
>T6CP015201 NZ_HG938371:200911-201438 [Burkholderia cenocepacia H111] [TssJ]
ATGTCCATTCGTTTCGCTGTTTCAACCTTCTTGTCCGCTTGGCTTCTGTCTGCATGCGGTGCCTGGCAGTCCGTCTCGGA
CGCCTCGTCGAGCGCGTATCAGGCGGTGTTCTTCAAGCAGGTCAAGGTGCTCAACGTCGATCTGTCTGCTCGGGAGGCAT
TGAACCCCGATGACGCCGGCCGCGCGACATCGGTCGCGGTGCGCGTGTATCAGTTGAAGGACCGCAAGATGTTCGATGGT
GCGTCCTACGAGGATCTACTGAAGAATGACCGGACGGTGCTTGCGCAGGATCTGCAGGCCAACCTTGCCGCGGTGTTGAA
TCCGGGGGCGTCGGCAAGCCTTGCGCAGCCGATGCAGGCCGATACGAAGTACGTCGCGGTCGTGGCGTTCTATCGCAACC
CCGGCAACGGCGACGGGTGGAAGTACGTGATCGAAAAGAAGAAGCTCGACGCGGACAAGCCGTTGAAACTCGAGCTCGTC
GATCAGCTTCTGTTGGCCAGCGGCGCGATTCGCAACACATCGAGGTAG
ATGTCCATTCGTTTCGCTGTTTCAACCTTCTTGTCCGCTTGGCTTCTGTCTGCATGCGGTGCCTGGCAGTCCGTCTCGGA
CGCCTCGTCGAGCGCGTATCAGGCGGTGTTCTTCAAGCAGGTCAAGGTGCTCAACGTCGATCTGTCTGCTCGGGAGGCAT
TGAACCCCGATGACGCCGGCCGCGCGACATCGGTCGCGGTGCGCGTGTATCAGTTGAAGGACCGCAAGATGTTCGATGGT
GCGTCCTACGAGGATCTACTGAAGAATGACCGGACGGTGCTTGCGCAGGATCTGCAGGCCAACCTTGCCGCGGTGTTGAA
TCCGGGGGCGTCGGCAAGCCTTGCGCAGCCGATGCAGGCCGATACGAAGTACGTCGCGGTCGTGGCGTTCTATCGCAACC
CCGGCAACGGCGACGGGTGGAAGTACGTGATCGAAAAGAAGAAGCTCGACGCGGACAAGCCGTTGAAACTCGAGCTCGTC
GATCAGCTTCTGTTGGCCAGCGGCGCGATTCGCAACACATCGAGGTAG