Detailed information of component protein


Summary

Component ID T6CP015200
Component protein type TssF
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (370 a.a.); Nucleotide sequence (1110 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17410
Coordinate (Strand) 199662..200771 (+)
NCBI ID WP_144417392.1
RefSeq NZ_HG938371
Uniprot ID UPI00118740B9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.5e-74 20..337
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-369 MKLHDFPNLDPLVASLLARAPRMSFMQLCRLLEARFPDRPGFGTRDGLEHEPVRFRPRPRMGFPASEVASVEFDDGSDTFGPGSPPTVRTTFMGLYGVDAAMPSHLIDEIVLREEGHEAVEAFLDQFNHRYVTLLYRAWRKYRYSEHFRPGGVDAHSRNLLCLAGFGWGDKPKRAGLPDSRMLALLGLLIQRTRTPEGLAGVVALAVPRVEVRVDEFWPVVTSTGRPRPLTGVGRAAGKSGTRQRNGLGGGYVLGKRMAYRSRAVRVTVRPADARQAQDLLPGAGLHRDLLAFVQLYVGVKADVHLRMEVSSRYTPEPAIGQGNVGPAPRLGWTTVLPADEERIVNIALGVYEAFPAPVPNPYLTASHA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9678 - -


  Protein sequence: 370 a.a.    

>T6CP015200 NZ_HG938371:199662-200771 [Burkholderia cenocepacia H111] [TssF]
MKLHDFPNLDPLVASLLARAPRMSFMQLCRLLEARFPDRPGFGTRDGLEHEPVRFRPRPRMGFPASEVASVEFDDGSDTF
GPGSPPTVRTTFMGLYGVDAAMPSHLIDEIVLREEGHEAVEAFLDQFNHRYVTLLYRAWRKYRYSEHFRPGGVDAHSRNL
LCLAGFGWGDKPKRAGLPDSRMLALLGLLIQRTRTPEGLAGVVALAVPRVEVRVDEFWPVVTSTGRPRPLTGVGRAAGKS
GTRQRNGLGGGYVLGKRMAYRSRAVRVTVRPADARQAQDLLPGAGLHRDLLAFVQLYVGVKADVHLRMEVSSRYTPEPAI
GQGNVGPAPRLGWTTVLPADEERIVNIALGVYEAFPAPVPNPYLTASHA*

  Nucleotide sequence: 1110 bp    

>T6CP015200 NZ_HG938371:199662-200771 [Burkholderia cenocepacia H111] [TssF]
ATGAAACTGCACGACTTCCCGAATCTGGATCCGCTGGTCGCCTCGCTCCTCGCGCGCGCACCGCGAATGAGCTTCATGCA
GCTTTGCCGGTTGCTCGAAGCGCGTTTTCCCGATCGGCCCGGGTTCGGTACACGGGACGGGCTCGAGCATGAACCGGTGC
GCTTCCGGCCGCGACCGCGAATGGGTTTTCCGGCGAGTGAGGTTGCGTCGGTCGAGTTCGATGACGGATCGGACACGTTC
GGGCCGGGTTCACCGCCGACCGTGCGCACGACGTTCATGGGGCTGTACGGCGTCGATGCGGCGATGCCGTCGCACCTGAT
CGACGAGATCGTGCTGCGCGAGGAAGGGCACGAGGCGGTCGAGGCGTTTCTCGACCAGTTCAATCACCGGTATGTCACGT
TGCTGTATCGAGCGTGGCGGAAGTATCGTTATTCGGAACATTTCCGGCCTGGTGGCGTTGACGCGCATTCGCGCAACCTG
CTGTGCCTGGCAGGGTTCGGCTGGGGTGACAAGCCGAAGCGCGCCGGCCTGCCCGATTCGCGGATGCTGGCGTTGCTCGG
GCTCCTGATTCAGCGCACCCGCACGCCGGAGGGGCTGGCAGGCGTTGTTGCGCTGGCTGTTCCGCGAGTCGAGGTGCGGG
TCGACGAGTTCTGGCCGGTCGTGACGTCGACGGGGCGGCCGCGGCCGCTTACCGGTGTCGGGCGTGCTGCCGGGAAATCG
GGAACCCGTCAACGTAACGGGTTGGGTGGAGGTTACGTATTGGGAAAGCGGATGGCGTATCGAAGCCGGGCGGTACGCGT
GACGGTGCGGCCGGCCGATGCTCGGCAGGCGCAGGACCTATTGCCGGGTGCGGGGCTGCATCGCGATTTGCTGGCCTTTG
TACAGTTATATGTCGGTGTCAAGGCGGACGTACACCTGCGTATGGAGGTGTCGTCGCGATATACGCCGGAACCCGCGATC
GGTCAGGGAAACGTCGGACCGGCGCCCCGGCTCGGCTGGACCACCGTGCTGCCCGCCGACGAGGAACGGATCGTCAATAT
CGCGCTCGGCGTCTACGAAGCTTTTCCTGCGCCGGTCCCGAATCCATACCTTACCGCGTCGCATGCTTGA