Detailed information of component protein


Summary

Component ID T6CP015199
Component protein type TssF
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (605 a.a.); Nucleotide sequence (1815 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17405
Coordinate (Strand) 197851..199665 (+)
NCBI ID WP_006494500.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343AD0
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.1e-180 4..600
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-604 MANDDPILRYYEAEMRYLRESGKEFAQAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVELIPLSEKLQKTEVVPAGVSIRSAPIPVPPPADAEGLSPKTVQCIYRTTQAVTLQPVTVTHAGPAVRHDGRSVIRLGFSLGGSARRRETDLSRLRLYLNADLPTAFAMHLALTRQVDTIQLRVPEIRDGEAMPLAGVTIEPAGFSAEERLWPKADVAFSGYQLLLEYFTFREKFLFVELRGLDVTTLPERTTRFELEIVLTQAYPSDQRFSAENVRLFCSPVINLFELDAEPIEIDHHETEYRVVPAGHQGEHVETYSVDAIEAFDHETAERYEYVPFATFRHRGGMLRHEAPERYFHSRVRSGVAGLHETWVVLGGHAWETMEALPEESLSLRVTGTNGLLPRKGLREASLDEFATSSQSVAGVRNLVSPTLPLYPPMEDRFQWRVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQALIEEMSGGSVERGVLIEVTLDSHAFAGDGDVMLFGELLHRFFALYADINLFTKLAIVSLPSQARIEWPRSKAERAPL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9985 - -


  Protein sequence: 605 a.a.    

>T6CP015199 NZ_HG938371:197851-199665 [Burkholderia cenocepacia H111] [TssF]
MANDDPILRYYEAEMRYLRESGKEFAQAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL
LWPHYLRMIPSLSVVELIPLSEKLQKTEVVPAGVSIRSAPIPVPPPADAEGLSPKTVQCIYRTTQAVTLQPVTVTHAGPA
VRHDGRSVIRLGFSLGGSARRRETDLSRLRLYLNADLPTAFAMHLALTRQVDTIQLRVPEIRDGEAMPLAGVTIEPAGFS
AEERLWPKADVAFSGYQLLLEYFTFREKFLFVELRGLDVTTLPERTTRFELEIVLTQAYPSDQRFSAENVRLFCSPVINL
FELDAEPIEIDHHETEYRVVPAGHQGEHVETYSVDAIEAFDHETAERYEYVPFATFRHRGGMLRHEAPERYFHSRVRSGV
AGLHETWVVLGGHAWETMEALPEESLSLRVTGTNGLLPRKGLREASLDEFATSSQSVAGVRNLVSPTLPLYPPMEDRFQW
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQALIEEMSGGSVERGVLIEVTLDSHAFAGDGDVML
FGELLHRFFALYADINLFTKLAIVSLPSQARIEWPRSKAERAPL*

  Nucleotide sequence: 1815 bp    

>T6CP015199 NZ_HG938371:197851-199665 [Burkholderia cenocepacia H111] [TssF]
ATGGCAAACGACGATCCCATCCTGCGCTACTACGAAGCGGAAATGCGCTATTTACGCGAGTCCGGCAAGGAATTCGCGCA
GGCGCATCCCGATCGCGCACGGCTGCTCAACCTCGACCGTGTCGGCGATCGTGATCCGTACGTCGAGCGGCTGTTCGAGG
GTTTCGCCTTCCTGACCGGGCGCCTTCGGCAGAAGCTCGACGACGAGTTGCCCGAGCTGACGGAAGGGCTGGTCAGCCTG
TTATGGCCGCACTACTTGCGCATGATCCCGTCGTTGTCGGTTGTGGAGCTCATCCCGCTGTCGGAAAAGCTTCAGAAGAC
CGAAGTCGTGCCGGCAGGCGTATCGATCCGTTCCGCGCCGATCCCCGTACCGCCGCCCGCGGACGCGGAAGGTCTGTCGC
CGAAGACCGTGCAATGCATTTACAGGACCACGCAAGCGGTCACGCTGCAACCCGTCACGGTTACGCATGCCGGGCCGGCC
GTGCGCCACGATGGCCGCTCGGTGATCCGGCTCGGCTTCTCGCTCGGCGGGTCGGCACGGCGGCGGGAAACGGATCTGTC
CCGGCTGCGCCTGTACCTGAATGCGGATCTGCCGACGGCGTTCGCGATGCATCTTGCGCTCACGCGCCAGGTCGACACGA
TCCAGTTGCGCGTTCCGGAGATCCGCGACGGCGAGGCGATGCCGCTCGCCGGTGTCACCATCGAACCGGCCGGCTTCTCG
GCCGAGGAGCGACTGTGGCCAAAGGCCGACGTGGCTTTCTCCGGCTATCAGTTGCTGCTCGAATACTTTACGTTCCGTGA
GAAATTCCTGTTCGTGGAGCTTCGCGGACTGGACGTCACAACGCTGCCGGAACGTACCACCCGCTTCGAACTGGAGATCG
TGCTGACGCAGGCCTATCCGTCGGACCAGCGCTTCAGCGCGGAAAACGTGCGGCTATTCTGCTCGCCCGTGATCAACCTG
TTCGAGCTGGATGCCGAGCCGATCGAGATCGACCATCACGAAACCGAATATCGCGTGGTGCCGGCGGGGCATCAAGGCGA
GCATGTCGAAACGTATTCCGTCGACGCGATCGAGGCATTCGACCACGAAACGGCCGAGCGATATGAATACGTGCCGTTCG
CGACGTTCCGCCATCGCGGCGGGATGTTGCGCCACGAGGCGCCGGAGCGGTATTTCCATTCGCGCGTGCGCTCGGGCGTG
GCGGGATTGCACGAAACGTGGGTGGTGCTCGGCGGTCACGCATGGGAAACCATGGAGGCGCTGCCCGAGGAAAGCTTGTC
GTTGCGTGTGACGGGCACGAACGGGTTGCTGCCGCGCAAGGGGCTGAGGGAGGCCAGTCTCGACGAATTCGCGACCAGTT
CACAGAGCGTCGCCGGGGTGCGCAATCTCGTCTCGCCGACGCTACCGCTGTACCCGCCGATGGAAGACCGGTTCCAGTGG
CGGGTGCTGTCGCACCTGGCGCCGAACTTCCTGTCGATGATGAACGCGGAAGTGCTGCGTGGGGCGCTCGCGCTCTACGA
CTGGACGGACGACGAGCTGAACCGTCGACGGCTCGCGGGCATCCGGTGGGTGTCACAGGCACTGATCGAGGAGATGTCGG
GTGGCTCGGTCGAGCGGGGCGTGCTGATCGAGGTCACGCTCGATAGCCACGCGTTCGCCGGGGACGGTGACGTGATGCTG
TTCGGCGAACTGCTGCATCGGTTCTTCGCGCTCTACGCGGACATCAACCTGTTCACGAAGCTCGCGATCGTCAGTCTGCC
GTCGCAGGCCCGGATCGAATGGCCACGCAGCAAGGCCGAACGGGCGCCGCTATGA