Detailed information of component protein


Summary

Component ID T6CP015198
Component protein type TssA
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (527 a.a.); Nucleotide sequence (1581 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17400
Coordinate (Strand) 196261..197841 (+)
NCBI ID WP_006494501.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343AD1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 7.3e-77 218..485
ImpA_N PF06812.14 4.9e-18 31..135
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-526 MTLANFVKTLVGGPRVASLQEARRNTWAAWLAPIPGEHAHGRDPGYEDAFFELKDEATKLSGIDDGLITRACEQLLKETGKDLRLVGYYAFARLRQDGPAGFADGLELAASLIDRFGETLLPVRAEAKRAALEMLSTARMIETLDSRGDFAPADLERAIAALDVLVTRTGTWSDAARPNLHPLVARFGNRDEPVRTVSPDLAMPQTPASTIVSSGSIASARDVLDQARAMSAWLREQENGYLPSVRIARSVRWDTLHDVPPSDAASHTRLTPPRAELRQQLKRLVLQKQWHELLERVEGAFMEGVNHLWFDLQYFQHVALDHVGAPYRAWSEVLRVDFALFLERLPGIERLSFSDGTPFSDDTTLEWIARHAVVRDLEGGEAVAPLPVSADSEGEAGDWPEIEAQARELVARDGVEAAFAWLDALPGMKTGRHRFLQRLVMARVADHAGRPDTALALLVELDTSSRSLPVMHWEPALAFEVKQQLVRALKATGNRKDADKPTLARRIGELQAELTVLDPARALTLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9436 - -


  Protein sequence: 527 a.a.    

>T6CP015198 NZ_HG938371:196261-197841 [Burkholderia cenocepacia H111] [TssA]
MTLANFVKTLVGGPRVASLQEARRNTWAAWLAPIPGEHAHGRDPGYEDAFFELKDEATKLSGIDDGLITRACEQLLKETG
KDLRLVGYYAFARLRQDGPAGFADGLELAASLIDRFGETLLPVRAEAKRAALEMLSTARMIETLDSRGDFAPADLERAIA
ALDVLVTRTGTWSDAARPNLHPLVARFGNRDEPVRTVSPDLAMPQTPASTIVSSGSIASARDVLDQARAMSAWLREQENG
YLPSVRIARSVRWDTLHDVPPSDAASHTRLTPPRAELRQQLKRLVLQKQWHELLERVEGAFMEGVNHLWFDLQYFQHVAL
DHVGAPYRAWSEVLRVDFALFLERLPGIERLSFSDGTPFSDDTTLEWIARHAVVRDLEGGEAVAPLPVSADSEGEAGDWP
EIEAQARELVARDGVEAAFAWLDALPGMKTGRHRFLQRLVMARVADHAGRPDTALALLVELDTSSRSLPVMHWEPALAFE
VKQQLVRALKATGNRKDADKPTLARRIGELQAELTVLDPARALTLS*

  Nucleotide sequence: 1581 bp    

>T6CP015198 NZ_HG938371:196261-197841 [Burkholderia cenocepacia H111] [TssA]
ATGACGCTAGCCAATTTCGTAAAAACACTCGTCGGCGGTCCACGCGTCGCTTCGCTGCAGGAAGCGCGCCGGAATACCTG
GGCGGCATGGCTTGCCCCGATACCGGGGGAGCACGCGCATGGCCGCGATCCCGGCTACGAGGATGCGTTCTTCGAACTGA
AGGACGAAGCGACCAAGCTGTCCGGAATCGACGACGGACTGATTACCCGCGCATGCGAACAGTTGCTCAAGGAAACCGGA
AAGGATCTGCGGCTGGTCGGCTACTACGCGTTTGCGCGATTGCGTCAGGACGGTCCTGCCGGGTTCGCCGACGGACTCGA
GCTGGCCGCTTCGCTGATCGACCGGTTCGGCGAGACCTTGCTGCCCGTGCGAGCCGAGGCAAAGCGCGCGGCGCTGGAAA
TGCTGTCGACCGCGCGAATGATCGAAACGCTGGACAGCCGCGGCGACTTCGCGCCCGCGGATCTCGAGCGCGCGATTGCG
GCGCTCGACGTGCTCGTCACCCGCACCGGTACGTGGTCCGATGCCGCCCGCCCGAACCTGCATCCGCTCGTTGCCCGCTT
CGGCAACAGGGATGAACCGGTTCGCACCGTCAGCCCGGACTTGGCGATGCCGCAGACGCCCGCTTCGACAATCGTATCGA
GCGGCTCGATCGCATCGGCGCGCGACGTGCTCGATCAGGCCCGCGCGATGTCCGCATGGCTGCGCGAGCAGGAAAACGGC
TATTTGCCGTCGGTGCGTATCGCGCGCAGCGTGCGGTGGGACACGTTGCACGACGTGCCGCCGTCCGATGCCGCGTCGCA
CACGCGTCTGACGCCGCCACGTGCCGAGTTGCGCCAGCAACTGAAGCGGCTCGTGCTGCAGAAACAATGGCACGAACTGC
TCGAACGCGTCGAAGGTGCGTTCATGGAGGGCGTGAATCACCTGTGGTTCGACCTGCAGTACTTCCAGCACGTCGCGCTC
GATCACGTCGGCGCGCCGTACCGCGCGTGGAGCGAAGTGCTGCGCGTGGACTTTGCGTTGTTTCTCGAGCGTTTGCCGGG
GATCGAACGACTTTCGTTCAGCGACGGTACGCCGTTCTCCGACGACACGACGCTCGAGTGGATCGCCCGGCACGCGGTCG
TGCGTGACCTCGAAGGGGGCGAGGCCGTTGCACCGCTGCCGGTGTCGGCGGACAGCGAAGGCGAGGCGGGCGACTGGCCG
GAGATCGAGGCACAGGCTCGCGAGCTGGTCGCGCGCGACGGTGTCGAGGCCGCGTTCGCATGGCTCGATGCGCTGCCCGG
CATGAAGACCGGGCGTCACCGCTTCTTGCAGCGGCTCGTGATGGCGCGCGTGGCCGATCATGCGGGGCGACCCGATACGG
CCCTCGCGTTGCTGGTCGAACTCGACACGTCGTCACGTTCGCTGCCTGTGATGCACTGGGAGCCTGCTCTGGCGTTCGAG
GTCAAGCAGCAACTCGTGCGCGCGTTGAAAGCGACGGGCAACCGCAAGGATGCCGACAAACCGACGCTCGCGCGCCGCAT
CGGCGAACTGCAGGCGGAACTTACCGTGCTCGATCCGGCTCGAGCGCTGACTCTTTCGTAA