Detailed information of component protein


Summary

Component ID T6CP015197
Component protein type TssM
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (1271 a.a.); Nucleotide sequence (3813 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17395
Coordinate (Strand) 192452..196264 (+)
NCBI ID WP_043204566.1
RefSeq NZ_HG938371
Uniprot ID UPI0005BCF1C7
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2.3e-64 415..748
IcmF_C PF06744.14 7.3e-19 1017..1120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MIVRKI
Transmembrane helix 7-26 LGYWILVPAVTAFLAILAYF
Outside 27-40 KGGDIHPSPWFRVC
Transmembrane helix 41-63 VVIASGFVLLALHPLVIGAWGVV
Inside 64-361 ARHTSSRSASRYDRDPMARVGAPQNKDVVDLNAYRGATLCEALRNRHGRRWRYRARWVLIAGDVPLVKRLAPELVDAGYLIVGGTVLLYAKQFRDTLDTVWLDQIRRLRRRRPVDAIVAVTRNRSSVDTPFDTDNLSQRLARHARALRWAAPVYLLNVTDFGSEASSPDEAIGFTWANARVSSDAIDASLQGLTDNLADAGVVRLTKDAGDRYPAELSQHISNLGSALSGLVLQTSQSRIWRHAVHGLLFAPLFKERELAPPQAPASANNDDPPIEPQHRTIWQTVAEHSRKVHGRRV
Transmembrane helix 362-384 GFSLSTSAAWFTTGLIGCWIAGT
Outside 385-1270 MMSGFVNRATIQSSADTIANLSTVQDHTQALQALNTLGQQIDTLEVHQREGEPWTSRFGLNRDSALLGALWPSYAGAAHRILVAPIRQKLEARLQQLASLSDAQIADGGNVQTQAAYDTLKAYLMLAKPERAVAAFLTPQLAATAVPARPSNSSLSSGAWEDLRLHAIAFFASHLGRAPASDASAFAITPDGNLIASARQTVIGVRGIQNSTDALYQQIIDEATPKYPPVSLATLLGDTTSRGLFNTTATIPGVFTRAAWEERISKAIDDASAKRDVSGDWVLRPERNAVGATDNKDGSHPPPTLKAELRQRYFDDYARAWALFLNSLRWQSAPTLSATADQLTLLGDSQRSPLVALMNAIVYQAGTGASAQSLSESLINKAQQLVGTDEKDPSKQVQPQLAPLASAFGPILRLTGSDLVSGAPANGKAATQLAATGDLSLARYLERVTAMRLKASQIVSGADPDAIARLAAQSVLQGKTSDISDSRDYGSRVAASLGEQWAGFGALFRAPFDQAWQVVVQPAASSLNEIWRTAILADWNKSFGGRYPFSDADNDASLPEMARFMRPDHGVIAQFVATQLAGVIERQGDRWVVAQGADQGALTIDPVFLSSLNKLTQISTVLFPSGDARVRYELQAVPTPGVTGMKFVLSGRELRYFNQKQEWVPFEWPGQSLENLSHIEWQTEQGGLRTALDSQGRFGLIRLLERAKVTQQDNARYLLTWMPDTSQGIPLKVQLRSEAGAGPLDVLQLRNFALPARIFATGAVGARPKLSTASPPPLPAAAIAAAKHAAVLLPPGLPGAMSWQDAPMPATPEPAPAPRRTATAATAESARADAHPATSDMKSPKANPEMTVSSLAATSTSSDASSKPFGHALQLLGDAFAFRDPR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -


  Protein sequence: 1271 a.a.    

>T6CP015197 NZ_HG938371:192452-196264 [Burkholderia cenocepacia H111] [TssM]
MIVRKILGYWILVPAVTAFLAILAYFKGGDIHPSPWFRVCVVIASGFVLLALHPLVIGAWGVVARHTSSRSASRYDRDPM
ARVGAPQNKDVVDLNAYRGATLCEALRNRHGRRWRYRARWVLIAGDVPLVKRLAPELVDAGYLIVGGTVLLYAKQFRDTL
DTVWLDQIRRLRRRRPVDAIVAVTRNRSSVDTPFDTDNLSQRLARHARALRWAAPVYLLNVTDFGSEASSPDEAIGFTWA
NARVSSDAIDASLQGLTDNLADAGVVRLTKDAGDRYPAELSQHISNLGSALSGLVLQTSQSRIWRHAVHGLLFAPLFKER
ELAPPQAPASANNDDPPIEPQHRTIWQTVAEHSRKVHGRRVGFSLSTSAAWFTTGLIGCWIAGTMMSGFVNRATIQSSAD
TIANLSTVQDHTQALQALNTLGQQIDTLEVHQREGEPWTSRFGLNRDSALLGALWPSYAGAAHRILVAPIRQKLEARLQQ
LASLSDAQIADGGNVQTQAAYDTLKAYLMLAKPERAVAAFLTPQLAATAVPARPSNSSLSSGAWEDLRLHAIAFFASHLG
RAPASDASAFAITPDGNLIASARQTVIGVRGIQNSTDALYQQIIDEATPKYPPVSLATLLGDTTSRGLFNTTATIPGVFT
RAAWEERISKAIDDASAKRDVSGDWVLRPERNAVGATDNKDGSHPPPTLKAELRQRYFDDYARAWALFLNSLRWQSAPTL
SATADQLTLLGDSQRSPLVALMNAIVYQAGTGASAQSLSESLINKAQQLVGTDEKDPSKQVQPQLAPLASAFGPILRLTG
SDLVSGAPANGKAATQLAATGDLSLARYLERVTAMRLKASQIVSGADPDAIARLAAQSVLQGKTSDISDSRDYGSRVAAS
LGEQWAGFGALFRAPFDQAWQVVVQPAASSLNEIWRTAILADWNKSFGGRYPFSDADNDASLPEMARFMRPDHGVIAQFV
ATQLAGVIERQGDRWVVAQGADQGALTIDPVFLSSLNKLTQISTVLFPSGDARVRYELQAVPTPGVTGMKFVLSGRELRY
FNQKQEWVPFEWPGQSLENLSHIEWQTEQGGLRTALDSQGRFGLIRLLERAKVTQQDNARYLLTWMPDTSQGIPLKVQLR
SEAGAGPLDVLQLRNFALPARIFATGAVGARPKLSTASPPPLPAAAIAAAKHAAVLLPPGLPGAMSWQDAPMPATPEPAP
APRRTATAATAESARADAHPATSDMKSPKANPEMTVSSLAATSTSSDASSKPFGHALQLLGDAFAFRDPR*

  Nucleotide sequence: 3813 bp    

>T6CP015197 NZ_HG938371:192452-196264 [Burkholderia cenocepacia H111] [TssM]
ATGATCGTTCGCAAGATTCTGGGTTACTGGATTCTCGTACCAGCAGTCACCGCGTTCCTGGCGATTCTGGCGTACTTCAA
GGGAGGCGATATTCATCCGTCGCCTTGGTTCCGTGTCTGCGTCGTCATCGCGAGCGGCTTTGTTCTTCTGGCGCTACATC
CCCTTGTGATCGGTGCCTGGGGGGTGGTCGCCCGGCACACTTCCAGCCGATCGGCGAGCAGGTATGACCGCGATCCGATG
GCACGGGTTGGTGCGCCGCAGAATAAGGATGTGGTAGATCTCAATGCATACCGTGGTGCGACTCTTTGCGAGGCGCTGCG
CAACCGGCATGGCCGGCGCTGGCGTTATCGCGCGCGATGGGTTCTGATTGCCGGCGACGTCCCGCTCGTCAAGCGCCTGG
CGCCGGAACTCGTCGACGCCGGGTATCTGATCGTTGGCGGTACGGTCCTGCTCTACGCAAAGCAATTCCGCGATACCCTC
GATACCGTATGGCTCGACCAGATCCGCCGCCTGCGTCGTCGTCGTCCGGTCGATGCAATCGTCGCAGTCACACGTAACCG
CAGTTCCGTCGATACCCCATTCGACACCGACAATCTGTCGCAACGGCTCGCACGCCACGCGCGTGCGCTCCGCTGGGCCG
CGCCGGTCTATCTGCTCAATGTGACGGATTTCGGCAGCGAAGCGTCGAGTCCCGACGAGGCGATCGGCTTCACCTGGGCC
AACGCGCGCGTCAGCTCGGATGCGATCGACGCATCGCTGCAAGGCCTCACCGACAATCTGGCGGATGCCGGTGTCGTTCG
CCTCACGAAGGATGCAGGCGACCGCTACCCAGCTGAGCTGTCGCAGCACATTTCGAATCTCGGAAGTGCGCTATCTGGTC
TGGTGCTACAAACCTCCCAATCACGCATCTGGCGGCACGCGGTGCACGGCCTTCTGTTCGCACCGCTATTCAAGGAACGG
GAACTCGCACCGCCGCAGGCACCGGCCAGCGCGAACAATGACGACCCGCCCATCGAACCGCAACACCGCACGATCTGGCA
AACCGTCGCCGAGCACAGTCGCAAGGTCCACGGTCGCCGCGTAGGCTTCTCCCTGTCGACTTCGGCGGCATGGTTCACAA
CCGGCCTGATCGGCTGCTGGATTGCCGGCACGATGATGTCCGGCTTCGTCAACCGCGCGACGATCCAGAGCTCCGCGGAC
ACGATCGCTAATCTCTCCACGGTTCAGGACCACACACAGGCGTTGCAAGCCCTGAACACGTTGGGCCAACAGATCGACAC
GCTCGAAGTCCATCAGCGCGAAGGCGAGCCATGGACGTCGCGATTCGGCCTGAATCGCGATAGCGCACTCCTCGGCGCGT
TGTGGCCGAGTTACGCCGGCGCGGCGCACCGCATCCTCGTCGCCCCGATTCGCCAGAAGCTCGAAGCGCGCCTGCAACAG
CTCGCATCGCTGTCCGACGCTCAGATTGCCGACGGCGGCAACGTACAGACCCAGGCCGCCTACGACACGCTCAAAGCCTA
CCTGATGCTTGCGAAGCCGGAGCGCGCCGTGGCTGCTTTTCTGACGCCCCAGCTTGCCGCGACAGCCGTGCCTGCACGTC
CGTCCAACTCGTCCTTGTCGTCGGGCGCCTGGGAAGACCTGCGTCTGCACGCCATCGCGTTCTTCGCCAGCCATCTCGGC
CGCGCTCCCGCATCCGATGCATCCGCGTTCGCAATCACGCCGGACGGCAACCTGATTGCATCCGCCCGCCAAACGGTGAT
CGGTGTGCGGGGCATCCAGAATTCGACGGACGCGCTCTACCAGCAGATCATCGACGAAGCGACGCCGAAATATCCGCCGG
TTTCTCTCGCGACGCTGCTCGGCGACACGACGAGTCGCGGCCTGTTCAATACGACCGCGACCATCCCCGGCGTTTTCACG
CGTGCGGCATGGGAGGAGCGCATCTCGAAGGCGATCGATGACGCAAGCGCCAAGCGCGACGTGTCTGGCGACTGGGTGTT
GCGCCCCGAACGAAACGCCGTTGGGGCAACCGACAACAAGGACGGCAGCCATCCTCCGCCGACATTGAAAGCCGAACTGC
GCCAGCGCTACTTCGACGACTACGCGCGCGCATGGGCGCTGTTCCTCAACAGCTTGCGCTGGCAATCCGCGCCGACGCTG
TCGGCCACGGCCGACCAGTTGACACTCTTGGGCGACTCGCAACGTTCGCCGCTCGTCGCGTTGATGAACGCGATCGTCTA
CCAGGCGGGCACCGGCGCGAGCGCGCAGTCACTCTCCGAGAGCCTGATCAACAAGGCGCAACAACTGGTCGGCACCGACG
AAAAGGATCCGTCGAAGCAGGTTCAACCGCAACTCGCGCCGCTTGCCTCAGCCTTCGGCCCGATCCTGCGCCTGACCGGC
AGTGATCTGGTGTCCGGCGCGCCGGCCAATGGCAAGGCCGCCACGCAACTGGCCGCGACCGGCGACCTCAGTCTCGCACG
CTACCTCGAGCGTGTCACGGCGATGCGTCTGAAGGCATCGCAGATCGTCTCCGGCGCCGATCCCGACGCGATCGCGCGGC
TGGCCGCTCAGTCGGTCCTGCAGGGCAAGACGTCCGATATCTCGGACAGCCGCGACTACGGGAGCCGTGTGGCCGCGAGC
CTGGGCGAACAGTGGGCGGGCTTCGGTGCGCTGTTTCGTGCACCGTTCGATCAGGCGTGGCAAGTCGTCGTGCAGCCGGC
CGCATCGAGCCTGAACGAAATCTGGCGGACGGCGATCCTGGCCGACTGGAACAAGTCGTTCGGCGGCCGATATCCGTTCT
CGGACGCCGACAACGACGCATCGCTGCCCGAGATGGCGCGCTTCATGCGGCCCGACCATGGCGTGATCGCGCAGTTCGTT
GCAACGCAGCTTGCCGGTGTGATCGAGCGGCAGGGTGATCGGTGGGTCGTCGCACAAGGCGCGGACCAAGGCGCGCTTAC
GATCGATCCGGTCTTCCTGAGCAGCCTGAACAAGCTCACGCAGATCTCGACCGTGCTGTTCCCGTCCGGAGACGCGCGCG
TACGGTACGAACTGCAGGCAGTACCGACGCCGGGCGTCACCGGCATGAAGTTCGTGCTGTCCGGGCGCGAACTGCGCTAC
TTCAACCAGAAGCAGGAATGGGTGCCGTTCGAGTGGCCGGGCCAGTCGCTCGAGAACCTGTCGCACATCGAATGGCAGAC
CGAGCAGGGCGGATTGCGCACGGCGCTCGACTCGCAGGGGCGCTTCGGCCTGATCCGGCTGCTGGAGCGTGCGAAGGTCA
CGCAGCAGGACAACGCGCGTTACTTGCTGACGTGGATGCCGGACACGAGCCAAGGCATTCCGCTGAAGGTGCAATTGCGC
AGCGAGGCGGGCGCCGGTCCGCTCGACGTCCTTCAGTTGCGCAACTTTGCGCTGCCGGCGCGGATATTCGCGACCGGGGC
GGTGGGTGCCCGGCCGAAGCTGTCGACAGCCAGCCCGCCGCCGTTGCCGGCCGCGGCAATCGCAGCGGCAAAGCATGCTG
CCGTGCTGTTGCCGCCGGGGCTGCCGGGGGCGATGTCCTGGCAGGACGCACCGATGCCGGCGACGCCGGAGCCGGCGCCC
GCGCCTCGTCGAACCGCCACTGCCGCCACTGCGGAATCGGCCCGAGCGGACGCGCATCCGGCTACGTCCGACATGAAGTC
GCCCAAGGCCAATCCGGAGATGACGGTGTCGTCGCTGGCGGCGACTTCGACGTCCTCGGATGCCTCCTCCAAACCGTTCG
GACACGCCCTCCAGTTGCTGGGCGACGCATTTGCGTTTCGAGACCCGCGATGA