Detailed information of component protein


Summary

Component ID T6CP015196
Component protein type TssI
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (890 a.a.); Nucleotide sequence (2670 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17365
Coordinate (Strand) 183473..186142 (+)
NCBI ID WP_006494508.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343BD2
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.6e-60 30..349
DUF2345 PF10106.11 4.8e-50 604..750
T6SS_Vgr PF13296.8 1.4e-29 485..585
Phage_base_V PF04717.14 2.3e-06 416..466
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-889 MSMILPSQAYELKLAPHPAPTSVLRFTGRDAVSELYRYDIEFTSPMAGIPTDQVIGRPAKFIIAPVDPNMDYLRKMFGENAGQFSTMSPVHTIHGVITQFDEFGSSADQTHYRVRLEPKLADLNRGVTSRLFQKQSVEEIVTDTLRHYGYRAGVDFLFKLRGEYKRREYITQYHETTFAFIQRICAEEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVSYRRDSGLESSGADAIKTLEKRIRRVPEAVRLHDYNHRQAGVSLLIEENAARDDTTTSGVDYRWGEHYETPEEGKSVARLRHEAHLAAQITFKGTGNPFWLEAGEVMRIEPTPADAKHGIFITAVQSQGGRDQSYWMTFEGIPSDRVWRTSIDAIKRPAIDGILPARITSPGDYKYAYLTEQGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDDYGHHFPLIDGAEVAVVFTQGHPDRPVIIGAMHDSLHPDLVNSRNHTRNLIRTAARNEMRMEDREGVEHIHLTTPFQTSELNLGHMVDESRNERGRGAELRTDEHVAIRGGKGVFISADMLSVPNGQQLDMRPAQGLLELALQQMQSLADAAQAAEAVTADYSKQKILLDETLTELKRAGVLISAPAGVGIVSGDHLQLAASKNLIATAGGNADIGVVKRFTVAAGETISMFAAKLGIKLFAAKGKVAIQAQTDEMALAALKDVTITSSEGRLVLSAAKEVWIGAGGSYIKIDANRIENGTPGDILEKCASWNKPGAASAQISPALPNSLPAERLMLNLGASPSAMAAIPQDIPYKLYAQGALVAQGVTDSTGRIAVDHRPGTQSYRVEFANGVAYQIPVSEEFRGDATNGQLANQGFHFFEQGPDGDGADRAAHRRHYYSLMNPESDAESTGTPS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9640 - -


  Protein sequence: 890 a.a.    

>T6CP015196 NZ_HG938371:183473-186142 [Burkholderia cenocepacia H111] [TssI]
MSMILPSQAYELKLAPHPAPTSVLRFTGRDAVSELYRYDIEFTSPMAGIPTDQVIGRPAKFIIAPVDPNMDYLRKMFGEN
AGQFSTMSPVHTIHGVITQFDEFGSSADQTHYRVRLEPKLADLNRGVTSRLFQKQSVEEIVTDTLRHYGYRAGVDFLFKL
RGEYKRREYITQYHETTFAFIQRICAEEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVSYRRDSGLESSGADAIKTLEK
RIRRVPEAVRLHDYNHRQAGVSLLIEENAARDDTTTSGVDYRWGEHYETPEEGKSVARLRHEAHLAAQITFKGTGNPFWL
EAGEVMRIEPTPADAKHGIFITAVQSQGGRDQSYWMTFEGIPSDRVWRTSIDAIKRPAIDGILPARITSPGDYKYAYLTE
QGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDDYGHHFPLIDGAEVAVVFTQGHPDRPVIIGAMHDSLHPDLVNSRNHT
RNLIRTAARNEMRMEDREGVEHIHLTTPFQTSELNLGHMVDESRNERGRGAELRTDEHVAIRGGKGVFISADMLSVPNGQ
QLDMRPAQGLLELALQQMQSLADAAQAAEAVTADYSKQKILLDETLTELKRAGVLISAPAGVGIVSGDHLQLAASKNLIA
TAGGNADIGVVKRFTVAAGETISMFAAKLGIKLFAAKGKVAIQAQTDEMALAALKDVTITSSEGRLVLSAAKEVWIGAGG
SYIKIDANRIENGTPGDILEKCASWNKPGAASAQISPALPNSLPAERLMLNLGASPSAMAAIPQDIPYKLYAQGALVAQG
VTDSTGRIAVDHRPGTQSYRVEFANGVAYQIPVSEEFRGDATNGQLANQGFHFFEQGPDGDGADRAAHRRHYYSLMNPES
DAESTGTPS*

  Nucleotide sequence: 2670 bp    

>T6CP015196 NZ_HG938371:183473-186142 [Burkholderia cenocepacia H111] [TssI]
ATGTCGATGATACTGCCGTCGCAGGCTTATGAATTGAAGCTGGCGCCTCATCCGGCGCCGACGTCCGTGCTGCGGTTTAC
GGGCCGGGACGCCGTGAGCGAGCTGTATCGCTACGACATCGAATTCACGAGCCCGATGGCGGGCATCCCGACGGATCAAG
TGATCGGCCGTCCCGCGAAATTCATTATCGCGCCGGTCGATCCGAATATGGACTATCTGCGCAAAATGTTCGGCGAGAAC
GCCGGGCAATTCAGCACGATGTCGCCGGTCCATACGATCCACGGCGTCATCACGCAGTTCGACGAGTTCGGCAGTTCGGC
CGATCAGACCCACTATCGCGTGCGGCTCGAGCCGAAGCTCGCCGACCTTAACCGGGGTGTGACGAGCCGGTTGTTCCAGA
AGCAGTCCGTCGAGGAAATCGTGACCGATACGCTGCGTCATTACGGGTACCGCGCGGGGGTCGACTTCCTGTTTAAGCTG
CGCGGCGAGTACAAGCGGCGCGAGTACATCACCCAGTATCACGAAACGACATTCGCGTTTATCCAGCGCATTTGTGCGGA
AGAGGGAATCTGGTTCCGCTGGGAGCAGAAGAAGGATCACGCTGTGATCGTGTTTGGCGATGATCTGGATGCCTACGCAC
GCAAGCAACGCACCGTGTCGTACCGGCGAGACTCGGGGCTAGAGAGTTCCGGTGCGGACGCGATCAAGACGCTCGAGAAG
CGAATCCGGCGCGTGCCCGAAGCCGTGCGTCTGCACGACTACAACCATCGACAGGCCGGGGTGTCACTGCTCATCGAGGA
AAACGCCGCGCGCGACGACACGACGACGAGCGGCGTCGATTACCGCTGGGGCGAACATTACGAGACGCCGGAAGAGGGTA
AGAGCGTGGCCCGCCTGCGTCACGAGGCGCATCTCGCTGCGCAGATCACGTTCAAGGGCACGGGTAATCCGTTCTGGCTC
GAAGCCGGTGAGGTCATGCGGATCGAGCCGACTCCGGCCGACGCGAAGCACGGGATTTTCATCACGGCGGTTCAGTCGCA
GGGCGGTCGCGATCAGTCGTATTGGATGACGTTCGAGGGGATTCCGTCTGATCGTGTGTGGCGTACGTCGATCGATGCGA
TCAAGCGACCGGCCATCGACGGCATTCTGCCCGCGCGCATTACCTCTCCCGGGGATTACAAGTACGCATATCTGACCGAA
CAGGGCTGGTATGTGATCAAGCTGCCGTTCGACCTCGATGAGTGGAGCCCGGGTGGGACAAGCCGGCCGGTGCGGTTCGC
GAAGCCGTATAGCGGTGACGACTATGGGCATCATTTTCCGCTGATCGACGGGGCGGAGGTGGCTGTTGTTTTCACGCAAG
GTCATCCGGATCGGCCGGTGATTATCGGGGCGATGCATGACAGTCTGCATCCGGATCTCGTCAACAGTCGGAACCATACC
CGGAACCTGATCCGTACCGCCGCGCGGAATGAAATGCGGATGGAGGATAGGGAGGGTGTCGAGCATATTCATCTGACGAC
GCCGTTTCAGACCAGTGAGCTGAACCTTGGGCACATGGTCGATGAAAGCCGAAACGAGCGCGGCAGGGGCGCGGAACTCC
GTACCGACGAACACGTTGCGATACGGGGAGGAAAGGGCGTTTTCATCTCCGCTGACATGCTGTCGGTACCGAACGGCCAG
CAGCTCGACATGCGACCGGCCCAGGGACTGCTCGAGCTCGCGCTGCAGCAGATGCAGTCGCTTGCCGACGCGGCACAAGC
TGCTGAAGCGGTCACTGCGGATTATTCGAAGCAGAAGATCCTGCTGGACGAGACTTTGACCGAACTGAAGAGGGCCGGGG
TGCTGATCAGCGCGCCGGCGGGTGTCGGAATCGTGTCGGGTGACCATCTGCAACTCGCAGCCAGCAAGAACCTGATCGCG
ACCGCAGGCGGGAATGCCGACATCGGCGTTGTCAAGCGATTCACCGTGGCCGCCGGCGAAACCATCTCGATGTTCGCTGC
GAAACTCGGTATCAAGTTATTTGCCGCGAAGGGAAAGGTGGCCATTCAGGCGCAAACCGATGAAATGGCGCTGGCTGCGT
TGAAGGACGTGACGATCACCAGTTCGGAGGGGCGGCTCGTCCTGTCCGCGGCGAAGGAAGTGTGGATTGGCGCGGGCGGA
TCGTATATCAAGATCGATGCGAATCGCATCGAAAACGGTACGCCGGGAGACATTCTCGAGAAGTGCGCGTCGTGGAACAA
GCCTGGCGCGGCCTCGGCGCAGATCAGTCCGGCGCTGCCGAACAGTTTGCCGGCAGAACGTTTGATGCTGAACTTGGGCG
CCTCGCCTTCGGCCATGGCGGCCATTCCGCAAGACATCCCATACAAGCTGTATGCGCAAGGCGCCCTTGTCGCTCAAGGC
GTTACGGATTCGACCGGGCGAATCGCCGTCGATCATCGCCCCGGCACGCAATCGTATCGGGTCGAATTCGCCAATGGCGT
GGCCTATCAAATCCCGGTGAGCGAGGAGTTCCGCGGCGATGCAACCAACGGACAGTTGGCCAACCAGGGTTTCCATTTCT
TCGAGCAAGGGCCTGACGGCGACGGCGCTGATCGCGCAGCCCATCGTCGGCATTACTACAGCCTGATGAATCCCGAAAGT
GACGCTGAAAGCACGGGGACCCCGTCATGA