Detailed information of component protein


Summary

Component ID T6CP015195
Component protein type TssC
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (511 a.a.); Nucleotide sequence (1533 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17360
Coordinate (Strand) 181859..183391 (+)
NCBI ID WP_006494509.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343BD3
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.3e-122 87..385
VipB_2 PF18945.2 4.8e-40 394..505
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-510 MNQNESRQRASETIALENDSVYAALCNKINLKPVAEARPLEAFRDNDALSEASADERVARGMDALLNLIAKESKPVDRLDKSLLDFYIGQLDRQISRQLDAVMHAPDFQALEGRWRGLKMLVSRTDFRKNARIEVLDVSKEALQRDFEDSPELIQSGLYRLTYIEEYDTPGGQPISAMISDFEFANSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKKSMEEVASIQDIGNYFDRAEYIKWKSFRDTDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDKYLWVNASFAFAANMVRSFVSNGWCVQIRGPQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPGDELQASHPLREAKVTVEDIEDNPGFFRIKLFIIPHFQVEGMDIGLSLVSQMPKAKG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9844 - -


  Protein sequence: 511 a.a.    

>T6CP015195 NZ_HG938371:181859-183391 [Burkholderia cenocepacia H111] [TssC]
MNQNESRQRASETIALENDSVYAALCNKINLKPVAEARPLEAFRDNDALSEASADERVARGMDALLNLIAKESKPVDRLD
KSLLDFYIGQLDRQISRQLDAVMHAPDFQALEGRWRGLKMLVSRTDFRKNARIEVLDVSKEALQRDFEDSPELIQSGLYR
LTYIEEYDTPGGQPISAMISDFEFANSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKKSMEEVASIQDIGNYFDRAEY
IKWKSFRDTDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDKYLWVNASFAFAANMVRSFVSNGWCVQIRG
PQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSR
INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPGDELQASHPLREAKVTVEDIEDNPGFF
RIKLFIIPHFQVEGMDIGLSLVSQMPKAKG*

  Nucleotide sequence: 1533 bp    

>T6CP015195 NZ_HG938371:181859-183391 [Burkholderia cenocepacia H111] [TssC]
ATGAACCAGAATGAATCGCGCCAGCGCGCCTCGGAAACCATCGCGCTCGAAAACGACAGTGTCTATGCCGCGCTGTGCAA
CAAGATCAACCTGAAGCCGGTCGCCGAGGCGCGGCCGCTCGAGGCGTTCCGTGACAACGATGCGTTGTCGGAAGCATCGG
CCGACGAGCGGGTCGCACGCGGGATGGACGCATTGCTCAACCTGATCGCGAAGGAAAGCAAGCCGGTCGACCGGCTCGAC
AAGTCGCTGCTCGATTTCTACATCGGGCAGCTTGACCGGCAGATCAGCCGCCAACTCGACGCGGTCATGCACGCACCGGA
TTTCCAGGCGCTCGAAGGGCGCTGGCGCGGCCTGAAGATGCTCGTGTCGCGCACGGACTTCCGCAAGAACGCCCGCATCG
AGGTGCTCGATGTATCGAAGGAGGCGCTGCAGCGCGACTTCGAGGATTCTCCGGAGCTGATCCAGAGCGGCCTGTATCGC
CTCACGTACATCGAGGAATACGACACGCCGGGTGGCCAGCCGATCAGCGCAATGATCAGCGATTTCGAATTCGCGAACTC
GCCGATGGATGTCGCGCTGCTGCGCAATATTTCGAAGGTGGCGGCTGCGGCGCACATGCCGTTCATCGGCTCGGTGGGCG
CGGCGTTCTTCGGCAAGAAGTCGATGGAAGAGGTGGCGTCCATCCAGGATATCGGCAACTACTTCGATCGTGCCGAGTAC
ATCAAATGGAAGAGTTTTCGCGACACCGACGACGCGCGTTACGTCGGCCTGACGATGCCGCGCGTGCTCGGCCGTTTGCC
GTATGGCAAGGATACGACGCCGGTGCGTGCGTTCAACTACGAAGAGGCGGTGAAGGGACCGGACCACGACAAGTATCTGT
GGGTCAACGCGTCGTTCGCGTTCGCGGCCAACATGGTGCGCAGCTTCGTCAGCAACGGCTGGTGCGTGCAGATTCGAGGC
CCGCAGGCGGGCGGCAAGGTGGAAGACCTGCCGGTTCACCTGTATGACCTCGGCACCGGCGTGCAACCGAAGATTCCGAC
CGAAGTGCTGATCCCGGAAACGCGCGAGTTCGAGTTCGCGAATCTCGGCTTCATCCCGCTGTCGTTCTACAAGAACCACG
ACTTCGCGTGCTTCTTCTCGGCCAGCTCGACGCAAAAGCCGGCGTTGTACGAGACGAAGGAGGCGACGGCCAACAGTCGC
ATCAACGCGCGCTTGCCATACATCTTCCTGCTGTCGCGTATCGCGCACTACCTGAAGCTGATCCAGCGTGAAAACATCGG
CACGACCAAGGACCGGCGTCTGCTCGAACTCGAGCTGAACAACTGGATCAAGGGGCTCGTGACCGAGATGAAGGATCCGG
GCGACGAACTGCAGGCGTCGCACCCGCTGCGCGAGGCGAAGGTGACGGTCGAGGACATCGAGGATAACCCCGGCTTCTTC
CGCATCAAGCTCTTCATCATCCCGCACTTCCAGGTCGAGGGCATGGACATCGGCCTGTCGCTCGTGTCGCAGATGCCGAA
GGCGAAGGGCTGA