Detailed information of component protein
Summary
| Component ID | T6CP015194 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01197  (Type i2) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (171 a.a.); Nucleotide sequence (513 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS17355 |
| Coordinate (Strand) | 181273..181785 (+) |
| NCBI ID | WP_006494510.1 |
| RefSeq | NZ_HG938371 |
| Uniprot ID | UPI0002343BD4 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.2e-54 | 6..156 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-170 | MDSFQREIPKSRVSITLDLHTGGAQKKVELPLKLLVAGDFSAGREQAPLAERKKVNIDKNNFDAVLADHAPDLKVAAENTLAGDGSELPVSLSFRSMKDFEPEQVARQIPELQAMLAMRNLLRDLKSNLLDNGMFRREFEKILKDKRLSDKLRGELGQIATATLQQEGHA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9919 | - | - |
Protein sequence: 171 a.a.
>T6CP015194 NZ_HG938371:181273-181785 [Burkholderia cenocepacia H111] [TssB]
MDSFQREIPKSRVSITLDLHTGGAQKKVELPLKLLVAGDFSAGREQAPLAERKKVNIDKNNFDAVLADHAPDLKVAAENT
LAGDGSELPVSLSFRSMKDFEPEQVARQIPELQAMLAMRNLLRDLKSNLLDNGMFRREFEKILKDKRLSDKLRGELGQIA
TATLQQEGHA*
MDSFQREIPKSRVSITLDLHTGGAQKKVELPLKLLVAGDFSAGREQAPLAERKKVNIDKNNFDAVLADHAPDLKVAAENT
LAGDGSELPVSLSFRSMKDFEPEQVARQIPELQAMLAMRNLLRDLKSNLLDNGMFRREFEKILKDKRLSDKLRGELGQIA
TATLQQEGHA*
Nucleotide sequence: 513 bp
>T6CP015194 NZ_HG938371:181273-181785 [Burkholderia cenocepacia H111] [TssB]
ATGGATAGCTTCCAGAGAGAAATTCCGAAGAGCCGTGTCTCGATTACGCTGGATTTGCATACGGGCGGGGCTCAGAAGAA
AGTCGAGCTGCCGTTGAAGCTGCTCGTCGCGGGCGACTTCAGCGCGGGCCGCGAACAGGCGCCGCTGGCCGAACGCAAGA
AGGTCAATATCGACAAGAACAATTTCGATGCCGTCCTGGCCGACCATGCGCCGGATCTCAAGGTGGCCGCCGAGAACACC
TTGGCCGGCGACGGCTCGGAATTGCCGGTGAGTCTTTCGTTCCGCTCGATGAAGGATTTCGAGCCCGAGCAGGTGGCTCG
CCAGATTCCCGAGCTGCAAGCGATGCTGGCGATGCGCAATCTGTTGCGCGATCTCAAGTCGAACCTGCTCGACAACGGCA
TGTTCCGCCGCGAGTTCGAGAAGATCCTGAAGGACAAGCGCCTGTCCGACAAGCTGCGCGGCGAACTGGGACAAATCGCC
ACGGCAACCCTGCAACAGGAAGGTCATGCGTGA
ATGGATAGCTTCCAGAGAGAAATTCCGAAGAGCCGTGTCTCGATTACGCTGGATTTGCATACGGGCGGGGCTCAGAAGAA
AGTCGAGCTGCCGTTGAAGCTGCTCGTCGCGGGCGACTTCAGCGCGGGCCGCGAACAGGCGCCGCTGGCCGAACGCAAGA
AGGTCAATATCGACAAGAACAATTTCGATGCCGTCCTGGCCGACCATGCGCCGGATCTCAAGGTGGCCGCCGAGAACACC
TTGGCCGGCGACGGCTCGGAATTGCCGGTGAGTCTTTCGTTCCGCTCGATGAAGGATTTCGAGCCCGAGCAGGTGGCTCG
CCAGATTCCCGAGCTGCAAGCGATGCTGGCGATGCGCAATCTGTTGCGCGATCTCAAGTCGAACCTGCTCGACAACGGCA
TGTTCCGCCGCGAGTTCGAGAAGATCCTGAAGGACAAGCGCCTGTCCGACAAGCTGCGCGGCGAACTGGGACAAATCGCC
ACGGCAACCCTGCAACAGGAAGGTCATGCGTGA