Detailed information of component protein


Summary

Component ID T6CP015193
Component protein type TssK
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) I35_RS17350
Coordinate (Strand) 179323..180675 (-)
NCBI ID WP_006494511.1
RefSeq NZ_HG938371
Uniprot ID UPI0002343BD5
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3e-123 18..447
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MRIAKPLWHEGLILTQQHFQQQDRWAEFALRQYTSAAIAQPWGTLAVEVDEEALSTGRLKLTRLRLCFPDGTPIDTTVADTLPSARDLTQGVPADLQSVVVFAALALPDANGSNCRFDEVSLARPRRAYREFVKVTDLNGTGETEIAVERHAVRLVFDFESHADDTVCAIARLTRGSGGQFEVDRQFVPPCLTLGGHPLHIERINRLTDILHAKTLALGTRRSERIAEVAEYGVADVQLFWLLHCIHAAWPQLRLFGAHPSRPPEHLYTTLAQLTSALMTFSTEAQLTDIPVYDHGRADDVFAKLESLIRTLLDAIIPSRVVSIGLTRKGPTTWTGQFLDERIVADTADWYLSVNAPMPAFELVEQFPRLCKIGAPDDVEHIINSALLGVPLKAVQRVPGAIPVRLDNHYFALDASSAVHAKMLAARACQIYLPASVPDASLELYAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9779 - -


  Protein sequence: 451 a.a.    

>T6CP015193 NZ_HG938371:c180675-179323 [Burkholderia cenocepacia H111] [TssK]
MRIAKPLWHEGLILTQQHFQQQDRWAEFALRQYTSAAIAQPWGTLAVEVDEEALSTGRLKLTRLRLCFPDGTPIDTTVAD
TLPSARDLTQGVPADLQSVVVFAALALPDANGSNCRFDEVSLARPRRAYREFVKVTDLNGTGETEIAVERHAVRLVFDFE
SHADDTVCAIARLTRGSGGQFEVDRQFVPPCLTLGGHPLHIERINRLTDILHAKTLALGTRRSERIAEVAEYGVADVQLF
WLLHCIHAAWPQLRLFGAHPSRPPEHLYTTLAQLTSALMTFSTEAQLTDIPVYDHGRADDVFAKLESLIRTLLDAIIPSR
VVSIGLTRKGPTTWTGQFLDERIVADTADWYLSVNAPMPAFELVEQFPRLCKIGAPDDVEHIINSALLGVPLKAVQRVPG
AIPVRLDNHYFALDASSAVHAKMLAARACQIYLPASVPDASLELYAVLRS*

  Nucleotide sequence: 1353 bp    

>T6CP015193 NZ_HG938371:c180675-179323 [Burkholderia cenocepacia H111] [TssK]
ATGCGAATCGCGAAGCCGCTATGGCACGAGGGCCTCATCCTGACGCAGCAGCATTTTCAGCAACAGGATAGGTGGGCTGA
ATTTGCGCTACGTCAGTACACATCCGCTGCTATCGCTCAGCCGTGGGGAACGCTTGCCGTCGAAGTCGACGAAGAAGCGC
TGTCGACCGGGCGCCTGAAACTCACCCGCCTGCGGCTCTGTTTTCCGGACGGTACGCCGATCGATACGACCGTCGCCGAT
ACGCTGCCGTCTGCACGCGATCTGACGCAAGGCGTGCCGGCGGACCTGCAGAGCGTCGTTGTCTTCGCAGCGCTCGCGCT
GCCGGATGCGAATGGCAGCAACTGCCGCTTCGACGAGGTGTCGCTCGCCCGACCGCGGCGCGCTTACCGTGAATTCGTCA
AGGTCACGGACCTGAATGGAACCGGCGAGACCGAAATTGCGGTCGAACGGCATGCAGTCCGGCTCGTGTTCGACTTCGAG
TCGCACGCCGACGACACGGTTTGCGCGATCGCGCGACTGACGCGCGGGTCCGGCGGCCAGTTCGAGGTCGATCGCCAGTT
CGTGCCGCCATGCCTCACGCTCGGTGGCCATCCGCTGCACATCGAACGGATCAATCGCCTGACGGATATCCTGCACGCCA
AGACCCTCGCGCTCGGTACGCGTCGCAGTGAACGCATTGCCGAGGTCGCGGAATACGGCGTGGCCGACGTGCAACTCTTC
TGGCTGCTTCATTGCATCCACGCGGCCTGGCCGCAGTTGCGGCTGTTTGGCGCCCACCCGAGCCGCCCTCCGGAGCATCT
GTATACGACGCTCGCGCAACTGACGAGCGCGCTGATGACGTTCTCCACCGAAGCGCAGCTCACCGACATTCCGGTGTACG
ACCATGGGCGAGCCGACGACGTGTTCGCGAAACTGGAATCGCTGATCCGCACGCTGCTCGACGCCATCATTCCGTCGCGG
GTCGTGTCGATCGGCCTCACGCGCAAAGGGCCGACTACGTGGACCGGCCAGTTTCTCGACGAACGGATCGTCGCAGATAC
CGCCGACTGGTATCTGTCGGTCAACGCGCCGATGCCCGCGTTCGAACTGGTCGAACAGTTTCCGCGGCTTTGCAAGATCG
GCGCGCCCGACGACGTCGAGCACATCATCAACTCGGCTCTGCTGGGCGTCCCGCTCAAGGCGGTCCAGCGCGTGCCTGGC
GCGATCCCGGTGCGTTTGGACAATCACTATTTCGCGCTGGACGCGTCCAGTGCCGTGCACGCGAAGATGCTCGCCGCGCG
AGCCTGCCAGATCTATCTGCCCGCGTCGGTACCGGACGCTTCGCTCGAACTTTATGCCGTATTGCGTTCATGA