Detailed information of component protein


Summary

Component ID T6CP015191
Component protein type TssD
T6SS ID (Type) T6SS01197 experimental (Type i2)
Strain Burkholderia cenocepacia H111
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) I35_RS17335
Coordinate (Strand) 176283..176768 (-)
NCBI ID WP_006494514.1
RefSeq NZ_HG938371
Uniprot ID A0A2A4CJH5_9BURK, A0A6P2G2Z2_9BURK, A0A3P0N651_9BURK
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6e-38 6..146

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MAIPAYMWLKDDGGADIKGSVTVQDREGSVELVAFDHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMHDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9852 - -



  Protein sequence: 162 a.a.    

>T6CP015191 NZ_HG938371:c176768-176283 [Burkholderia cenocepacia H111] [TssD]
MAIPAYMWLKDDGGADIKGSVTVQDREGSVELVAFDHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMHDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S*

  Nucleotide sequence: 486 bp    

>T6CP015191 NZ_HG938371:c176768-176283 [Burkholderia cenocepacia H111] [TssD]
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGCGCCGATATCAAGGGTTCGGTGACGGTGCAGGACCGCGA
AGGCAGCGTCGAACTCGTCGCCTTCGACCATGGCGTGCATATCCCGACCGACGGCAACACCGGCAAGCTGACGGGCACGC
GCGTCCACAAGCCGATCACGCTGACGAAGGAAACCGACGCATCGACGCCTTATCTGTACAAGGCCGTGACGAGCGGCCAG
ACGCTCAAGTCGGTCGAGATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAATACGAAGCTCGA
CAACGTGAAGATCGTCGCGGTGAATCCGGTCATGCACGACATCAAGAATCCGGACTACGAGAAGCACAACCACCTCGAAA
ACGTGGAGCTTCGCTACGAAACGATCACGTGGTCGTACAAGGACGGCAACATTATCCACAAGGACACCTGGAACGAGCGG
TCCTGA