Detailed information of component protein
Summary
| Component ID | T6CP015191 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01197  (Type i2) |
| Strain | Burkholderia cenocepacia H111 |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | I35_RS17335 |
| Coordinate (Strand) | 176283..176768 (-) |
| NCBI ID | WP_006494514.1 |
| RefSeq | NZ_HG938371 |
| Uniprot ID | A0A2A4CJH5_9BURK, A0A6P2G2Z2_9BURK, A0A3P0N651_9BURK |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 6e-38 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MAIPAYMWLKDDGGADIKGSVTVQDREGSVELVAFDHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMHDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9852 | - | - |
Protein sequence: 162 a.a.
>T6CP015191 NZ_HG938371:c176768-176283 [Burkholderia cenocepacia H111] [TssD]
MAIPAYMWLKDDGGADIKGSVTVQDREGSVELVAFDHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMHDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S*
MAIPAYMWLKDDGGADIKGSVTVQDREGSVELVAFDHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMHDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S*
Nucleotide sequence: 486 bp
>T6CP015191 NZ_HG938371:c176768-176283 [Burkholderia cenocepacia H111] [TssD]
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGCGCCGATATCAAGGGTTCGGTGACGGTGCAGGACCGCGA
AGGCAGCGTCGAACTCGTCGCCTTCGACCATGGCGTGCATATCCCGACCGACGGCAACACCGGCAAGCTGACGGGCACGC
GCGTCCACAAGCCGATCACGCTGACGAAGGAAACCGACGCATCGACGCCTTATCTGTACAAGGCCGTGACGAGCGGCCAG
ACGCTCAAGTCGGTCGAGATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAATACGAAGCTCGA
CAACGTGAAGATCGTCGCGGTGAATCCGGTCATGCACGACATCAAGAATCCGGACTACGAGAAGCACAACCACCTCGAAA
ACGTGGAGCTTCGCTACGAAACGATCACGTGGTCGTACAAGGACGGCAACATTATCCACAAGGACACCTGGAACGAGCGG
TCCTGA
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGCGCCGATATCAAGGGTTCGGTGACGGTGCAGGACCGCGA
AGGCAGCGTCGAACTCGTCGCCTTCGACCATGGCGTGCATATCCCGACCGACGGCAACACCGGCAAGCTGACGGGCACGC
GCGTCCACAAGCCGATCACGCTGACGAAGGAAACCGACGCATCGACGCCTTATCTGTACAAGGCCGTGACGAGCGGCCAG
ACGCTCAAGTCGGTCGAGATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAATACGAAGCTCGA
CAACGTGAAGATCGTCGCGGTGAATCCGGTCATGCACGACATCAAGAATCCGGACTACGAGAAGCACAACCACCTCGAAA
ACGTGGAGCTTCGCTACGAAACGATCACGTGGTCGTACAAGGACGGCAACATTATCCACAAGGACACCTGGAACGAGCGG
TCCTGA